Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.6e-115 419.5 215 100.0
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.6e-115 419.5 215 100.0
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.5e-115 418.3 215 99.5
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.4e-108 396.4 215 95.8
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.2e-107 393.3 215 94.9
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 6.1e-99 364.4 210 91.4
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 3.4e-73 278.9 214 71.0
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 1.7e-69 266.5 141 96.5
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 5.5e-68 261.5 203 67.5
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 7.2e-68 261.2 204 67.6
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 5.7e-65 251.5 210 64.8
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 3.5e-62 242.3 209 62.2
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 7.7e-62 241.1 173 69.9
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 1.7e-61 240.0 209 62.7
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.5e-60 236.9 206 63.6
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 3.3e-60 235.7 192 66.1
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 4.3e-60 235.3 221 57.5
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 5.6e-60 235.0 221 57.0
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 7.3e-60 234.6 180 66.1
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 2.1e-59 233.0 198 63.1
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 3.6e-59 232.3 205 63.9
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 6.1e-59 231.5 208 60.1
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 6.1e-59 231.5 199 61.3
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 8.0e-59 231.1 204 62.7
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.4e-58 230.3 210 60.5
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 1.8e-58 229.9 209 61.2
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 1.2e-57 227.3 178 65.2
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 2.0e-57 226.5 200 60.5
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 4.4e-57 225.3 195 61.5
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 2.2e-56 223.0 193 63.2
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 8.3e-56 221.1 173 61.8
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 1.8e-55 219.9 208 59.6
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 2.4e-55 219.5 192 60.9
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 2.4e-55 219.5 196 60.2
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 4.1e-55 218.8 186 58.1
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 7.0e-55 218.0 171 67.8
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 2.0e-54 216.5 176 62.5
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 2.7e-54 216.1 208 57.7
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 5.9e-54 214.9 203 58.6
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 1.0e-53 214.2 173 61.8
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 1.3e-53 213.8 155 70.3
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 1.3e-53 213.8 155 70.3
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 1.7e-53 213.4 208 57.2
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 2.3e-53 213.0 196 57.7
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 3.9e-53 212.2 191 57.6
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 3.9e-53 212.2 192 54.7
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 5.0e-53 211.8 214 56.5
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 5.0e-53 211.8 212 56.6
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 1.1e-52 210.7 182 58.8
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 1.5e-52 210.3 199 58.8
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.5e-52 210.3 184 58.7
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 1.9e-52 209.9 212 56.1
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 1.9e-52 209.9 148 68.2
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 3.3e-52 209.1 178 59.6
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.3e-52 209.1 109 99.1
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 4.3e-52 208.8 187 58.3
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 4.3e-52 208.8 169 62.7
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 5.6e-52 208.4 195 56.9
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 5.6e-52 208.4 169 62.7
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 7.3e-52 208.0 192 56.8
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 9.5e-52 207.6 178 59.0
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.2e-51 207.2 150 67.3
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 1.6e-51 206.8 205 56.6
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.1e-51 206.5 146 68.5
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 2.1e-51 206.5 183 56.8
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 8.0e-51 204.5 179 57.5
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 8.0e-51 204.5 199 54.8
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 1.4e-50 203.8 144 69.4
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 1.8e-50 203.4 208 54.8
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.8e-50 203.4 146 67.8
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.8e-50 203.4 163 60.7
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 2.3e-50 203.0 169 61.5
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 2.3e-50 203.0 222 52.7
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 3.1e-50 202.6 149 65.1
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 3.1e-50 202.6 177 60.5
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 5.2e-50 201.8 150 64.7
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 6.8e-50 201.4 185 55.1
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 1.2e-49 200.7 169 59.8
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 2.0e-49 199.9 212 55.7
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 4.4e-49 198.7 209 52.6
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 9.8e-49 197.6 194 55.2
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 2.2e-48 196.4 192 54.2
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 2.2e-48 196.4 149 63.1
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 2.4e-47 193.0 224 50.9
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 5.4e-47 191.8 208 54.3
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 3.5e-46 189.1 167 59.3
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 1.7e-45 186.8 161 64.0
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 1.2e-43 180.6 125 67.2
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 3.6e-43 179.1 193 52.3
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.3e-40 170.6 142 61.3
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 1.1e-36 157.5 157 49.7
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.9e-36 156.8 153 51.6
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.9e-36 156.8 153 51.6
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.1e-35 153.3 142 54.2
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 1.1e-34 151.0 162 54.3
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 1.2e-33 147.5 143 55.2
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.6e-30 137.1 84 77.4
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.1e-26 124.4 141 44.0
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 3.8e-24 115.9 115 51.3
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 3.8e-24 115.9 155 38.1
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 9.6e-20 101.3 183 33.3
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 6.2e-19 98.6 66 71.2
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 2.0e-17 93.6 163 32.5
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 1.2e-14 84.3 156 33.3
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 1.6e-14 84.0 168 29.2
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.5e-09 67.4 191 34.6
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 2.0e-09 67.0 49 57.1
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 1.7e-08 63.9 47 63.8
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.7e-08 63.9 202 30.2
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 2.9e-08 63.2 44 65.9
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 2.7e-06 56.6 43 60.5


User provided reference genes

Program Settings