Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.3e-178 628.2 317 100.0
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.3e-178 627.9 317 99.7
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-177 625.9 317 99.7
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.8e-176 622.5 317 99.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-175 619.8 317 98.1
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.0e-174 614.4 317 97.8
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-173 612.8 317 96.5
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 6.3e-169 597.4 319 94.4
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 7.7e-151 537.3 314 84.7
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.2e-148 530.0 319 83.7
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.6e-138 495.7 314 80.3
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.4e-138 495.0 263 95.1
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 6.3e-137 491.1 311 77.5
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 8.3e-137 490.7 314 76.1
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 3.5e-135 485.3 316 75.9
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 7.7e-135 484.2 314 75.5
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 5.0e-134 481.5 320 75.3
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 5.0e-134 481.5 312 79.2
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.5e-133 479.9 320 75.0
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 3.3e-133 478.8 317 77.0
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.6e-132 476.5 315 76.5
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 2.1e-132 476.1 314 73.2
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 4.7e-132 474.9 315 76.2
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.4e-131 473.4 350 70.9
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.4e-131 473.4 315 76.2
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.8e-131 473.0 312 76.0
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.0e-131 472.2 315 76.2
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 3.0e-131 472.2 315 75.9
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 6.8e-131 471.1 316 75.6
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 1.2e-130 470.3 315 74.9
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 2.6e-130 469.2 318 73.9
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 7.5e-130 467.6 316 72.8
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 2.2e-129 466.1 317 71.9
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 2.9e-129 465.7 315 73.0
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 3.7e-129 465.3 316 75.6
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 4.9e-129 464.9 314 70.7
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 6.4e-129 464.5 323 70.9
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 6.4e-129 464.5 317 71.6
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 8.3e-129 464.2 312 73.4
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 4.1e-128 461.8 323 70.6
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 5.4e-128 461.5 315 73.7
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 5.4e-128 461.5 321 70.1
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 9.2e-128 460.7 317 71.3
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.2e-127 460.3 316 72.5
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.6e-127 459.9 314 71.3
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.0e-127 459.5 318 72.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 2.0e-127 459.5 316 75.0
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 2.7e-127 459.1 316 74.7
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 3.5e-127 458.8 317 71.3
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 3.5e-127 458.8 315 72.1
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 5.0e-126 454.9 314 72.0
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 6.6e-126 454.5 311 70.7
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 8.6e-126 454.1 244 95.9
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 8.6e-126 454.1 312 69.9
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.9e-125 453.0 317 70.7
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 3.3e-125 452.2 317 69.7
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 3.3e-125 452.2 314 70.7
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 5.6e-125 451.4 313 72.2
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 5.6e-125 451.4 326 69.6
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 7.3e-125 451.1 316 69.9
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 9.5e-125 450.7 316 70.6
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 3.6e-124 448.7 315 69.8
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 4.7e-124 448.4 318 70.4
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 4.7e-124 448.4 318 69.2
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 6.2e-124 448.0 315 67.9
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.0e-123 447.2 314 70.4
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.4e-123 446.8 312 70.5
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.4e-123 446.8 314 69.4
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 2.3e-123 446.0 318 69.2
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 5.2e-123 444.9 314 70.7
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.2e-122 443.7 314 69.7
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.6e-122 442.6 316 68.0
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 4.4e-122 441.8 314 69.7
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.3e-121 440.3 340 66.5
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.7e-121 439.9 315 69.5
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.9e-121 439.1 315 68.3
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 3.7e-121 438.7 316 68.7
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 4.9e-121 438.3 315 70.2
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 6.4e-121 438.0 315 71.7
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 8.3e-121 437.6 315 67.0
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 8.3e-121 437.6 316 68.4
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 8.3e-121 437.6 370 60.8
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 4.1e-120 435.3 316 68.4
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 4.1e-120 435.3 316 69.3
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 4.1e-120 435.3 230 97.0
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.0e-119 433.0 315 69.2
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 3.5e-119 432.2 316 67.4
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.6e-118 427.9 314 65.9
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 6.6e-118 427.9 314 68.8
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 9.5e-117 424.1 305 70.5
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.6e-116 423.3 328 64.9
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.4e-115 420.2 335 64.2
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 5.2e-115 418.3 279 73.5
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.4e-114 415.2 282 73.0
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 9.2e-112 407.5 241 88.4
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 6.0e-111 404.8 297 68.4
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 7.8e-111 404.4 314 62.4
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 4.3e-109 398.7 314 63.1
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.3e-107 392.9 279 70.6
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 6.4e-105 384.8 316 61.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 2.4e-104 382.9 275 69.1
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 2.3e-102 376.3 238 78.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.6e-100 369.0 241 82.2
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-99 367.1 244 82.8
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 8.4e-97 357.8 239 72.8
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 2.0e-90 336.7 232 71.1
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 9.9e-90 334.3 314 52.5
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.3e-89 334.0 311 54.7
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 9.3e-88 327.8 203 80.3
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.3e-81 307.4 232 64.2
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 3.2e-80 302.8 241 63.9
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.5e-77 293.9 312 51.0
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 4.3e-69 265.8 180 76.1
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 7.4e-69 265.0 189 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 2.1e-68 263.5 303 45.5
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.0e-65 254.6 191 67.5
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.4e-51 207.6 321 41.4
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.5e-50 204.1 314 41.7
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 2.0e-50 203.8 131 74.8
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-46 191.4 110 90.0
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 2.2e-41 173.7 127 71.7
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 6.1e-39 165.6 123 69.1
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 1.4e-38 164.5 317 37.9
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 2.2e-36 157.1 111 70.3
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 2.2e-36 157.1 111 70.3
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 2.2e-36 157.1 111 70.3
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 4.1e-35 152.9 105 74.3
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 4.1e-35 152.9 76 92.1
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 9.1e-35 151.8 123 59.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 4.2e-32 142.9 84 89.3
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.2e-26 124.8 102 59.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 5.9e-26 122.5 90 63.3
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-25 121.7 60 93.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-25 121.7 60 93.3
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.3e-25 121.3 76 81.6
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-21 107.5 55 94.5
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 3.5e-18 96.7 84 58.3
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 9.8e-13 78.6 57 59.6
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 2.3e-06 57.4 44 70.5


User provided reference genes

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