Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0946 Fragaria x ananassa HOM05D001249 ORTHO05D002770 3.0e-74 282.0 165 100.0
FvH4_7g15470 Fragaria vesca HOM05D001249 ORTHO05D002770 2.3e-66 255.8 154 98.7
FAN06G4990 Fragaria x ananassa HOM05D001249 ORTHO05D002770 2.3e-66 255.8 154 98.7
FAN10G0303 Fragaria x ananassa HOM05D001249 ORTHO05D002770 4.4e-65 251.5 154 96.8
FAN10G3267 Fragaria x ananassa HOM05D001249 ORTHO05D002770 9.8e-65 250.4 154 96.1
RcHm_v2.0_Chr1g0357781 Rosa chinensis HOM05D001249 ORTHO05D002770 1.7e-56 223.0 154 76.6
Prupe.2G178300 Prunus persica HOM05D001249 ORTHO05D002770 2.5e-36 156.0 149 59.7
MD01G1072000 Malus domestica HOM05D001249 ORTHO05D002770 1.5e-25 120.2 139 51.8
CiPaw.01G068200 Carya illinoinensis HOM05D001249 ORTHO05D002770 7.1e-15 84.7 154 34.4
Psat3g105280 Pisum sativum HOM05D001249 ORTHO05D002770 9.3e-15 84.3 155 32.9
Nitab4.5_0010695g0040 Nicotiana tabacum HOM05D001249 ORTHO05D002770 2.1e-14 83.2 143 32.9
Medtr7g079180 Medicago truncatula HOM05D001249 ORTHO05D002770 3.5e-14 82.4 154 31.8
Nitab4.5_0000915g0100 Nicotiana tabacum HOM05D001249 ORTHO05D002770 4.6e-14 82.0 143 32.2
CiPaw.02G035700 Carya illinoinensis HOM05D001249 ORTHO05D002770 6.0e-14 81.6 143 33.6
FAN03G1093 Fragaria x ananassa HOM05D001249 ORTHO05D002770 6.0e-14 81.6 143 30.8
FAN10G1427 Fragaria x ananassa HOM05D001249 ORTHO05D002770 7.9e-14 81.3 143 30.8
Glyma.18G238700 Glycine max HOM05D001249 ORTHO05D002770 1.0e-13 80.9 143 31.5
Phvul.008G057900 Phaseolus vulgaris HOM05D001249 ORTHO05D002770 1.0e-13 80.9 156 37.8
FvH4_7g15440 Fragaria vesca HOM05D001249 ORTHO05D002770 1.3e-13 80.5 143 30.8
Glyma.09G254302 Glycine max HOM05D001249 ORTHO05D002770 1.3e-13 80.5 143 31.5
Cfa003866 Carpinus fangiana HOM05D001249 ORTHO05D002770 1.8e-13 80.1 154 33.1
FAN01G2548 Fragaria x ananassa HOM05D001249 ORTHO05D002770 1.8e-13 80.1 141 31.2
VMungo1383G2977 Vigna mungo HOM05D001249 ORTHO05D002770 1.8e-13 80.1 156 32.1
CsaV3_3G008590 Cucumis sativus L. HOM05D001249 ORTHO05D002770 2.3e-13 79.7 143 31.5
Peaxi162Scf00020g00154 Petunia axillaris HOM05D001249 ORTHO05D002770 2.3e-13 79.7 143 32.2
RcHm_v2.0_Chr1g0357771 Rosa chinensis HOM05D001249 ORTHO05D002770 2.3e-13 79.7 148 31.8
Dinv43867 Davidia involucrata HOM05D001249 ORTHO05D002770 3.0e-13 79.3 145 31.0
FAN10G3091 Fragaria x ananassa HOM05D001249 ORTHO05D002770 3.0e-13 79.3 143 30.1
Lsat_1_v5_gn_7_2601 Lactuca sativa HOM05D001249 ORTHO05D002770 3.0e-13 79.3 143 30.8
RcHm_v2.0_Chr1g0357761 Rosa chinensis HOM05D001249 ORTHO05D002770 3.0e-13 79.3 142 30.3
ClCG05G001200 Citrullus lanatus HOM05D001249 ORTHO05D002770 5.1e-13 78.6 143 30.8
Sed0017883 Sechium edule HOM05D001249 ORTHO05D002770 5.1e-13 78.6 143 31.5
Thhalv10009011m.g Eutrema salsugineum HOM05D001249 ORTHO05D002770 6.7e-13 78.2 143 30.1
Gorai.007G103700 Gossypium raimondii HOM05D001249 ORTHO05D002770 6.7e-13 78.2 143 30.8
FAN06G1373 Fragaria x ananassa HOM05D001249 ORTHO05D002770 8.7e-13 77.8 143 30.1
FAN06G1939 Fragaria x ananassa HOM05D001249 ORTHO05D002770 8.7e-13 77.8 143 30.1
Gohir.D11G097400 Gossypium hirsutum HOM05D001249 ORTHO05D002770 1.1e-12 77.4 143 30.8
MD07G1130900 Malus domestica HOM05D001249 ORTHO05D002770 1.1e-12 77.4 143 30.8
DCAR_025218 Daucus carota HOM05D001249 ORTHO05D002770 1.5e-12 77.0 142 31.0
Sp1g00840 Schrenkiella parvula HOM05D001249 ORTHO05D002770 1.5e-12 77.0 143 29.4
Haze_15569 Corylus avellana HOM05D001249 ORTHO05D002770 1.9e-12 76.6 141 32.6
MELO3C006079.2 Cucumis melo HOM05D001249 ORTHO05D002770 1.9e-12 76.6 143 31.5
FAN03G0166 Fragaria x ananassa HOM05D001249 ORTHO05D002770 1.9e-12 76.6 147 31.3
FAN06G3516 Fragaria x ananassa HOM05D001249 ORTHO05D002770 1.9e-12 76.6 147 31.3
FAN06G4194 Fragaria x ananassa HOM05D001249 ORTHO05D002770 1.9e-12 76.6 147 31.3
PSO266G0008 Papaver somniferum HOM05D001249 ORTHO05D002770 1.9e-12 76.6 143 31.5
Prupe.2G178000 Prunus persica HOM05D001249 ORTHO05D002770 1.9e-12 76.6 143 29.4
PGSC0003DMG400019407 Solanum tuberosum HOM05D001249 ORTHO05D002770 1.9e-12 76.6 142 30.3
CSS0034761 Camellia sinensis var. sinensis HOM05D001249 ORTHO05D002770 3.3e-12 75.9 143 38.5
Cfa003867 Carpinus fangiana HOM05D001249 ORTHO05D002770 3.3e-12 75.9 143 31.5
Thecc.01G352000 Theobroma cacao HOM05D001249 ORTHO05D002770 3.3e-12 75.9 143 30.8
MSTRG.14404 Avicennia marina HOM05D001249 ORTHO05D002770 4.3e-12 75.5 142 28.9
PSO384G2830 Papaver somniferum HOM05D001249 ORTHO05D002770 4.3e-12 75.5 143 30.8
TAR374G0414 Trochodendron aralioides HOM05D001249 ORTHO05D002770 4.3e-12 75.5 154 31.2
Actinidia20166 Actinidia chinensis HOM05D001249 ORTHO05D002770 5.6e-12 75.1 143 29.4
Carub.0001s0077 Capsella rubella HOM05D001249 ORTHO05D002770 5.6e-12 75.1 143 30.1
MD01G1071800 Malus domestica HOM05D001249 ORTHO05D002770 5.6e-12 75.1 143 29.4
PSO151G0033 Papaver somniferum HOM05D001249 ORTHO05D002770 5.6e-12 75.1 143 29.4
QL04p055662 Quercus lobata HOM05D001249 ORTHO05D002770 5.6e-12 75.1 143 31.5
Ca_07945_v3 Cicer arietinum L. HOM05D001249 ORTHO05D002770 7.4e-12 74.7 143 29.4
Sabra02G0146500 Salix brachista HOM05D001249 ORTHO05D002770 7.4e-12 74.7 143 31.5
AT1G01470 Arabidopsis thaliana HOM05D001249 ORTHO05D002770 9.6e-12 74.3 143 29.4
CAN.G78.132 Capsicum annuum HOM05D001249 ORTHO05D002770 9.6e-12 74.3 143 30.1
CARHR000900 Cardamine hirsuta HOM05D001249 ORTHO05D002770 9.6e-12 74.3 143 29.4
FvH4_7g15460 Fragaria vesca HOM05D001249 ORTHO05D002770 9.6e-12 74.3 147 30.6
Prupe.2G178200 Prunus persica HOM05D001249 ORTHO05D002770 9.6e-12 74.3 144 32.6
QL04p055693 Quercus lobata HOM05D001249 ORTHO05D002770 9.6e-12 74.3 143 30.8
vmacro13223 Vaccinium macrocarpon HOM05D001249 ORTHO05D002770 9.6e-12 74.3 143 27.3
arahy.Tifrunner.gnm1.ann1.GR5MMQ Arachis hypogaea HOM05D001249 ORTHO05D002770 1.3e-11 73.9 156 29.5
DCAR_006950 Daucus carota HOM05D001249 ORTHO05D002770 1.3e-11 73.9 145 30.3
Potri.002G165000 Populus trichocarpa HOM05D001249 ORTHO05D002770 1.3e-11 73.9 154 31.8
Manes.05G028700 Manihot esculenta HOM05D001249 ORTHO05D002770 1.6e-11 73.6 146 36.3
Oeu054357.1 Olea europaea HOM05D001249 ORTHO05D002770 1.6e-11 73.6 143 29.4
Os01g0225600 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D002770 1.6e-11 73.6 143 28.7
Glyma.16G031300 Glycine max HOM05D001249 ORTHO05D002770 2.1e-11 73.2 143 29.4
Gohir.A11G092600 Gossypium hirsutum HOM05D001249 ORTHO05D002770 2.1e-11 73.2 143 28.7
Ciclev10010508m.g Citrus clementina HOM05D001249 ORTHO05D002770 2.8e-11 72.8 142 30.3
Potri.014G090800 Populus trichocarpa HOM05D001249 ORTHO05D002770 2.8e-11 72.8 154 31.8
Rhsim05G0174500 Rhododendron simsii HOM05D001249 ORTHO05D002770 2.8e-11 72.8 143 25.2
TAR374G1706 Trochodendron aralioides HOM05D001249 ORTHO05D002770 2.8e-11 72.8 154 29.9
A08p37750 Brassica napus HOM05D001249 ORTHO05D002770 3.7e-11 72.4 143 28.7
BraA08t35672Z Brassica rapa HOM05D001249 ORTHO05D002770 3.7e-11 72.4 143 28.7
ECA236G1734 Erigeron canadensis HOM05D001249 ORTHO05D002770 3.7e-11 72.4 133 27.1
Manes.01G252100 Manihot esculenta HOM05D001249 ORTHO05D002770 3.7e-11 72.4 143 29.4
TAR629G1937 Trochodendron aralioides HOM05D001249 ORTHO05D002770 3.7e-11 72.4 143 29.4
Ciclev10023843m.g Citrus clementina HOM05D001249 ORTHO05D002770 4.8e-11 72.0 143 28.7
Eucgr.D02327 Eucalyptus grandis HOM05D001249 ORTHO05D002770 4.8e-11 72.0 143 28.7
Atru.chr5.585 Acer truncatum HOM05D001249 ORTHO05D002770 6.2e-11 71.6 145 25.5
CSS0027600 Camellia sinensis var. sinensis HOM05D001249 ORTHO05D002770 6.2e-11 71.6 143 29.4
MD07G1130800 Malus domestica HOM05D001249 ORTHO05D002770 6.2e-11 71.6 147 28.6
Aqoxy2G03633 Aquilegia oxysepala HOM05D001249 ORTHO05D002770 8.1e-11 71.2 142 33.1
BcaB03g13520 Brassica carinata HOM05D001249 ORTHO05D002770 8.1e-11 71.2 143 28.0
Sabra14G0065800 Salix brachista HOM05D001249 ORTHO05D002770 8.1e-11 71.2 143 30.8
Solyc10g011900.3 Solanum lycopersicum HOM05D001249 ORTHO05D002770 8.1e-11 71.2 143 28.7
PGSC0003DMG400000067 Solanum tuberosum HOM05D001249 ORTHO05D002770 8.1e-11 71.2 143 28.0
MSTRG.20864 Avicennia marina HOM05D001249 ORTHO05D002770 1.1e-10 70.9 143 29.4
THA.LOC104817321 Tarenaya hassleriana HOM05D001249 ORTHO05D002770 1.1e-10 70.9 143 29.4
Ah.05g180130 Amaranthus hybridus HOM05D001249 ORTHO05D002770 1.4e-10 70.5 143 27.3
Aqoxy1G00144 Aquilegia oxysepala HOM05D001249 ORTHO05D002770 1.4e-10 70.5 133 28.6
BcaB01g06149 Brassica carinata HOM05D001249 ORTHO05D002770 1.4e-10 70.5 143 28.7
BolC3t12567H Brassica oleracea HOM05D001249 ORTHO05D002770 1.4e-10 70.5 143 28.7
MD01G1071900 Malus domestica HOM05D001249 ORTHO05D002770 1.4e-10 70.5 147 28.6
Peaxi162Scf00585g00514 Petunia axillaris HOM05D001249 ORTHO05D002770 1.4e-10 70.5 152 28.9
Sed0002172 Sechium edule HOM05D001249 ORTHO05D002770 1.4e-10 70.5 143 28.0
AUR62022622 Chenopodium quinoa HOM05D001249 ORTHO05D002770 1.8e-10 70.1 141 28.4
Dinv32524 Davidia involucrata HOM05D001249 ORTHO05D002770 1.8e-10 70.1 151 28.5
Nn1g01694 Nelumbo nucifera HOM05D001249 ORTHO05D002770 1.8e-10 70.1 143 28.0
arahy.Tifrunner.gnm1.ann1.5K3X9F Arachis hypogaea HOM05D001249 ORTHO05D002770 2.4e-10 69.7 147 26.5
Oeu054358.1 Olea europaea HOM05D001249 ORTHO05D002770 2.4e-10 69.7 146 29.5
PSO304G0017 Papaver somniferum HOM05D001249 ORTHO05D002770 3.1e-10 69.3 144 30.6
Rhsim07G0009700 Rhododendron simsii HOM05D001249 ORTHO05D002770 3.1e-10 69.3 150 27.3
THA.LOC104827606 Tarenaya hassleriana HOM05D001249 ORTHO05D002770 3.1e-10 69.3 143 28.0
Cc02_g38620 Coffea canephora HOM05D001249 ORTHO05D002770 4.0e-10 68.9 143 36.4
PSO384G3115 Papaver somniferum HOM05D001249 ORTHO05D002770 4.0e-10 68.9 144 30.6
SEGI_07775 Sequoiadendron giganteum HOM05D001249 ORTHO05D002770 4.0e-10 68.9 143 25.9
arahy.Tifrunner.gnm1.ann1.P4KHGY Arachis hypogaea HOM05D001249 ORTHO05D002770 5.3e-10 68.6 147 25.9
AUR62004416 Chenopodium quinoa HOM05D001249 ORTHO05D002770 5.3e-10 68.6 141 27.7
Sopen10g005690 Solanum pennellii HOM05D001249 ORTHO05D002770 6.9e-10 68.2 153 27.5
C03p00060 Brassica napus HOM05D001249 ORTHO05D002770 9.0e-10 67.8 143 27.3
DCAR_005362 Daucus carota HOM05D001249 ORTHO05D002770 9.0e-10 67.8 154 27.3
CAN.G91.11 Capsicum annuum HOM05D001249 ORTHO05D002770 1.2e-09 67.4 152 29.6
Sc01g0003190 Simmondsia chinensis HOM05D001249 ORTHO05D002770 1.5e-09 67.0 143 26.6
CANSAT56G1473 Cannabis sativa HOM05D001249 ORTHO05D002770 2.0e-09 66.6 143 28.7
Lalb_Chr08g0233291 Lupinus albus HOM05D001249 ORTHO05D002770 2.0e-09 66.6 155 29.7
SMO334G0106 Selaginella moellendorffii HOM05D001249 ORTHO05D002770 2.0e-09 66.6 157 26.1
COL.COLO4_12782 Corchorus olitorius HOM05D001249 ORTHO05D002770 2.6e-09 66.2 143 26.6
Lalb_Chr11g0073301 Lupinus albus HOM05D001249 ORTHO05D002770 2.6e-09 66.2 143 32.2
PSO384G1265 Papaver somniferum HOM05D001249 ORTHO05D002770 2.6e-09 66.2 123 30.9
GSVIVG01026976001 Vitis vinifera HOM05D001249 ORTHO05D002770 2.6e-09 66.2 148 25.7
Thhalv10001664m.g Eutrema salsugineum HOM05D001249 ORTHO05D002770 3.4e-09 65.9 155 26.5
Hma1.2p1_0623F.1_g191120 Hydrangea macrophylla HOM05D001249 ORTHO05D002770 3.4e-09 65.9 143 28.7
ATR0721G031 Amborella trichopoda HOM05D001249 ORTHO05D002770 7.6e-09 64.7 143 25.9
AT2G46140 Arabidopsis thaliana HOM05D001249 ORTHO05D002770 1.0e-08 64.3 155 25.8
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 1.3e-08 63.9 141 24.1
Lsat_1_v5_gn_4_35200 Lactuca sativa HOM05D001249 ORTHO05D002770 1.3e-08 63.9 149 24.8
BcaC02g12496 Brassica carinata HOM05D001249 ORTHO05D002770 2.2e-08 63.2 155 25.2
BcaC02g12711 Brassica carinata HOM05D001249 ORTHO05D002770 2.2e-08 63.2 155 25.2
A05p01670 Brassica napus HOM05D001249 ORTHO05D002770 2.2e-08 63.2 155 25.2
C04p01910 Brassica napus HOM05D001249 ORTHO05D002770 2.2e-08 63.2 155 25.2
BraA05t19163Z Brassica rapa HOM05D001249 ORTHO05D002770 2.2e-08 63.2 155 25.2
PSO384G0080 Papaver somniferum HOM05D001249 ORTHO05D002770 2.2e-08 63.2 158 36.1
PSO384G4681 Papaver somniferum HOM05D001249 ORTHO05D002770 2.2e-08 63.2 128 27.3
AL4G45390 Arabidopsis lyrata HOM05D001249 ORTHO05D002770 2.9e-08 62.8 155 25.2
HanXRQChr04g0120831 Helianthus annuus HOM05D001249 ORTHO05D002770 2.9e-08 62.8 143 25.2
SalBow3G0488 Salvia bowleyana HOM05D001249 ORTHO05D002770 2.9e-08 62.8 133 25.6
Carub.0004s2882 Capsella rubella HOM05D001249 ORTHO05D002770 3.8e-08 62.4 155 25.2
HanXRQChr17g0562311 Helianthus annuus HOM05D001249 ORTHO05D002770 3.8e-08 62.4 133 24.1
PSO304G0001 Papaver somniferum HOM05D001249 ORTHO05D002770 3.8e-08 62.4 128 27.3
Pp3c22_13190 Physcomitrium patens HOM05D001249 ORTHO05D002770 4.9e-08 62.0 133 27.8
Aa31LG1G27540 Aethionema arabicum HOM05D001249 ORTHO05D002770 6.5e-08 61.6 149 24.8
SEGI_24564 Sequoiadendron giganteum HOM05D001249 ORTHO05D002770 1.4e-07 60.5 134 23.1
HPP92_005479 Vanilla planifolia HOM05D001249 ORTHO05D002770 1.4e-07 60.5 143 28.7
PSO304G0019 Papaver somniferum HOM05D001249 ORTHO05D002770 1.9e-07 60.1 123 29.3
ECA236G5025 Erigeron canadensis HOM05D001249 ORTHO05D002770 2.5e-07 59.7 142 23.9
GSVIVG01026975001 Vitis vinifera HOM05D001249 ORTHO05D002770 2.5e-07 59.7 134 26.1
HanXRQChr16g0523701 Helianthus annuus HOM05D001249 ORTHO05D002770 3.2e-07 59.3 143 25.2
CARHR141420 Cardamine hirsuta HOM05D001249 ORTHO05D002770 7.1e-07 58.2 155 24.5
Lj9C589T9 Lonicera japonica HOM05D001249 ORTHO05D002770 1.6e-06 57.0 143 27.3
Lj9C590T13 Lonicera japonica HOM05D001249 ORTHO05D002770 1.6e-06 57.0 143 27.3
THA.LOC104816436 Tarenaya hassleriana HOM05D001249 ORTHO05D002770 1.6e-06 57.0 124 25.8
VMungo0331G0253 Vigna mungo HOM05D001249 ORTHO05D002770 1.6e-06 57.0 143 35.7
Phvul.010G104800 Phaseolus vulgaris HOM05D001249 ORTHO05D002770 2.7e-06 56.2 154 33.8
vmacro20891 Vaccinium macrocarpon HOM05D001249 ORTHO05D002770 2.7e-06 56.2 119 27.7
Nitab4.5_0004481g0030 Nicotiana tabacum HOM05D001249 ORTHO05D002770 4.6e-06 55.5 152 30.3


User provided reference genes

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