Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 1.3e-56 223.0 129 100.0
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.3e-56 223.0 129 100.0
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 4.7e-46 188.0 137 85.4
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 5.7e-44 181.0 137 83.2
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 4.8e-43 177.9 103 100.0
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 2.4e-42 175.6 143 81.8
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 3.1e-42 175.3 136 81.6
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 5.4e-26 121.3 157 59.9
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 2.0e-25 119.4 158 55.7
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 5.6e-23 111.3 156 50.6
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 1.8e-21 106.3 150 50.7
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 2.6e-20 102.4 152 49.3
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 3.4e-20 102.1 154 54.5
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 5.7e-20 101.3 120 57.5
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 9.8e-20 100.5 154 53.2
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 6.4e-19 97.8 117 59.0
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.6e-17 93.2 155 51.0
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.7e-16 89.7 106 54.7
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 6.6e-16 87.8 161 42.2
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 8.6e-16 87.4 156 45.5
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 1.1e-15 87.0 147 44.2
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.5e-15 86.7 154 42.9
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 1.5e-15 86.7 106 59.4
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 4.3e-15 85.1 147 49.7
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 5.6e-15 84.7 143 49.0
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 7.3e-15 84.3 146 44.5
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 7.3e-15 84.3 148 48.0
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 1.2e-14 83.6 137 53.3
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 1.6e-14 83.2 136 44.9
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.6e-14 83.2 117 52.1
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 2.8e-14 82.4 142 47.9
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 4.7e-14 81.6 146 50.7
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 2.3e-13 79.3 103 48.5
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 5.2e-13 78.2 136 47.8
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 6.8e-13 77.8 136 47.8
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 6.8e-13 77.8 136 47.8
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.5e-12 76.6 141 41.8
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 2.0e-12 76.3 61 80.3
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 2.0e-12 76.3 61 75.4
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 2.6e-12 75.9 140 47.1
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 5.8e-12 74.7 150 46.7
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 5.8e-12 74.7 148 40.5
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 1.3e-11 73.6 148 45.9
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 1.7e-11 73.2 149 45.6
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 2.2e-11 72.8 147 45.6
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 3.7e-11 72.0 152 46.7
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 3.7e-11 72.0 107 48.6
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 3.7e-11 72.0 141 41.1
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 4.9e-11 71.6 141 46.8
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 4.9e-11 71.6 146 40.4
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 1.9e-10 69.7 133 46.6
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 2.4e-10 69.3 143 39.9
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 3.2e-10 68.9 71 63.4
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 4.1e-10 68.6 73 67.1
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 4.1e-10 68.6 129 45.7
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 5.4e-10 68.2 108 47.2
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 9.2e-10 67.4 89 62.9
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 9.2e-10 67.4 142 46.5
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 9.2e-10 67.4 89 62.9
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 9.2e-10 67.4 142 46.5
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 9.2e-10 67.4 89 62.9
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 9.2e-10 67.4 142 46.5
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 1.2e-09 67.0 140 36.4
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.6e-09 66.6 106 41.5
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 1.6e-09 66.6 119 40.3
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 2.0e-09 66.2 135 40.7
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 2.0e-09 66.2 142 47.2
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 2.0e-09 66.2 142 47.2
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 2.0e-09 66.2 145 38.6
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 2.7e-09 65.9 84 61.9
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 2.7e-09 65.9 102 51.0
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 6.0e-09 64.7 132 44.7
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 6.0e-09 64.7 74 66.2
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 7.8e-09 64.3 142 45.8
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 7.8e-09 64.3 161 43.5
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 7.8e-09 64.3 115 40.9
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 7.8e-09 64.3 143 37.8
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 1.3e-08 63.5 140 35.0
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 1.7e-08 63.2 149 43.6
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 1.7e-08 63.2 140 35.0
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 1.7e-08 63.2 110 49.1
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 2.3e-08 62.8 149 43.6
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 3.0e-08 62.4 148 37.2
CiPaw.09G163900 Carya illinoinensis HOM05D005060 ORTHO05D005975 3.9e-08 62.0 105 41.0
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 6.6e-08 61.2 65 61.5
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 1.5e-07 60.1 101 46.5
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 2.5e-07 59.3 144 38.9
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 3.3e-07 58.9 126 42.1
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 5.6e-07 58.2 138 40.6
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 7.3e-07 57.8 149 34.2
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 7.3e-07 57.8 143 42.7
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 1.2e-06 57.0 149 39.6
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 1.6e-06 56.6 142 39.4
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 1.6e-06 56.6 120 40.8
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 2.8e-06 55.8 44 70.5
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 3.6e-06 55.5 139 41.0
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 6.2e-06 54.7 87 56.3
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 6.2e-06 54.7 147 40.8
Sabra06G0020700 Salix brachista HOM05D005060 ORTHO05D005975 6.2e-06 54.7 104 44.2
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 8.1e-06 54.3 142 38.7


User provided reference genes

Program Settings