Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.0e-279 964.1 491 100.0
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-277 958.0 491 99.4
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 1.4e-276 955.7 491 99.4
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-253 879.0 493 90.3
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.4e-252 875.9 493 90.1
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.2e-252 873.2 493 90.1
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.6e-251 872.5 493 89.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.6e-248 862.4 493 89.2
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 3.3e-241 838.2 494 86.0
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 6.0e-219 764.2 494 80.8
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 4.2e-196 688.3 492 69.5
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 3.3e-169 599.0 495 62.6
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 1.6e-166 590.1 496 61.9
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 9.4e-164 580.9 477 63.3
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 4.0e-162 575.5 475 62.7
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.6e-158 563.5 495 58.4
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.0e-157 560.8 491 65.2
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 3.2e-156 555.8 495 58.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 5.5e-156 555.1 493 58.0
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 7.2e-156 554.7 492 58.9
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 9.4e-156 554.3 495 57.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.2e-155 553.9 498 59.4
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 3.6e-155 552.4 493 57.2
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 2.3e-154 549.7 493 59.6
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.2e-153 547.4 495 57.8
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 2.0e-153 546.6 493 58.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.7e-152 543.5 492 57.3
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 6.3e-152 541.6 492 57.5
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 8.3e-152 541.2 492 57.3
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 1.4e-151 540.4 493 56.6
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 7.0e-151 538.1 488 58.0
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 5.9e-150 535.0 498 56.8
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.6e-147 526.9 492 56.7
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 4.7e-147 525.4 496 54.8
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 4.7e-147 525.4 496 54.8
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 6.1e-147 525.0 498 54.6
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 8.0e-147 524.6 487 56.1
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.4e-146 523.9 498 56.8
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 3.0e-146 522.7 484 57.4
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 6.8e-146 521.5 493 56.8
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 5.7e-145 518.5 497 54.1
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.2e-144 516.5 495 54.5
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.8e-144 516.2 495 54.7
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 2.8e-144 516.2 494 56.1
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 4.9e-144 515.4 371 67.9
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 8.3e-144 514.6 495 54.7
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.4e-143 513.8 495 54.5
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 3.2e-143 512.7 496 54.0
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 9.2e-143 511.1 495 54.1
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 9.2e-143 511.1 492 55.3
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.2e-142 510.8 493 54.4
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.0e-142 510.0 480 54.6
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 3.5e-142 509.2 488 54.1
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 4.5e-142 508.8 483 57.1
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.0e-141 507.7 494 54.5
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 8.6e-141 504.6 495 53.3
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 2.5e-140 503.1 491 53.0
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 3.3e-140 502.7 488 53.3
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.2e-139 500.7 481 52.0
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 2.1e-139 500.0 481 52.0
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 6.1e-139 498.4 495 53.1
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.0e-138 497.7 503 52.9
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 3.1e-138 496.1 492 53.3
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 5.2e-138 495.4 487 53.0
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.2e-137 494.2 481 53.8
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 2.6e-137 493.0 486 52.5
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 7.5e-137 491.5 496 52.6
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.3e-136 490.7 495 52.7
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 2.2e-136 490.0 493 51.7
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 4.9e-136 488.8 492 52.4
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.2e-134 484.2 490 50.0
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 1.2e-134 484.2 485 53.6
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 2.7e-134 483.0 492 51.4
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.3e-133 480.7 491 48.9
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.3e-133 480.7 476 53.4
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 5.0e-133 478.8 489 51.9
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 1.5e-132 477.2 494 51.0
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 5.6e-132 475.3 491 50.3
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 7.3e-132 474.9 490 50.8
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 7.3e-132 474.9 494 53.6
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.6e-131 473.8 480 51.2
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 3.6e-131 472.6 486 50.8
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 5.8e-129 465.3 481 50.5
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 3.7e-128 462.6 404 58.7
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 3.7e-128 462.6 541 47.0
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.1e-127 461.1 491 50.7
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.4e-127 459.9 489 49.7
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 9.2e-127 458.0 484 51.0
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-126 456.8 497 49.5
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 1.0e-125 454.5 372 62.1
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 2.3e-125 453.4 484 50.8
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 8.6e-125 451.4 484 50.4
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 3.3e-124 449.5 483 49.7
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 4.3e-124 449.1 486 50.0
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.8e-123 446.4 500 49.0
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 6.2e-123 445.3 493 48.3
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.1e-122 444.5 460 53.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.1e-122 444.5 486 49.2
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.4e-122 444.1 494 48.4
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 2.9e-120 436.4 486 48.6
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 4.9e-120 435.6 496 46.4
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.5e-118 429.5 496 46.4
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.0e-117 426.4 484 47.1
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.5e-116 423.3 493 47.3
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 5.2e-114 415.6 381 56.4
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 9.9e-113 411.4 484 46.3
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.4e-112 408.7 489 48.3
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 3.2e-111 406.4 327 63.3
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 7.1e-111 405.2 484 47.1
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.3e-108 396.0 478 47.7
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 2.0e-105 387.1 435 47.6
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.1e-98 364.8 413 47.2
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 3.8e-96 356.3 525 39.8
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 4.2e-95 352.8 409 48.2
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 7.9e-94 348.6 286 60.1
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.0e-93 348.2 465 43.9
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.1e-92 344.7 290 59.7
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 2.5e-92 343.6 474 42.8
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 3.7e-91 339.7 287 59.9
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.4e-90 337.8 286 59.8
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.0e-85 320.1 252 61.9
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 7.4e-84 315.5 466 41.0
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.1e-82 310.1 373 45.8
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 2.1e-78 297.4 500 36.4
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 4.1e-74 283.1 363 47.4
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.3e-72 278.1 256 57.8
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.7e-72 277.7 411 41.6
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.2e-70 271.6 355 41.4
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 6.3e-67 259.2 377 41.4
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 5.3e-66 256.1 416 38.5
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 6.1e-62 242.7 184 66.8
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 3.7e-59 233.4 164 66.5
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 5.3e-58 229.6 321 40.8
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 7.0e-58 229.2 233 51.9
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 7.7e-57 225.7 254 49.6
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 1.7e-56 224.6 538 32.0
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 6.5e-56 222.6 184 61.4
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 2.5e-55 220.7 472 33.3
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 6.7e-53 212.6 495 32.5
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 2.6e-52 210.7 489 33.3
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 5.7e-52 209.5 473 32.1
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 7.5e-52 209.1 371 35.3
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 8.5e-48 195.7 230 46.5
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.6e-46 191.4 146 67.8
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 3.6e-46 190.3 171 57.3
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 8.0e-46 189.1 590 28.6
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-45 188.0 98 94.9
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 8.8e-45 185.7 417 33.3
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.8e-43 180.6 436 29.8
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 4.8e-43 179.9 455 30.5
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 1.7e-40 171.4 253 43.1
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 2.9e-40 170.6 368 32.9
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.2e-38 165.2 369 33.6
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 3.6e-38 163.7 259 39.0
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 2.3e-37 161.0 650 25.2
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.2e-36 158.7 276 37.7
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.0e-29 135.6 122 54.9
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 3.4e-28 130.6 128 53.1
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.2e-27 127.9 118 57.6
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.1e-26 125.6 93 63.4
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-23 115.5 151 43.7
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 2.5e-23 114.4 482 25.3
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 3.3e-23 114.0 305 33.4
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 9.5e-23 112.5 133 46.6
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 2.8e-22 110.9 132 46.2
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 4.4e-20 103.6 189 36.5
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 4.9e-19 100.1 144 43.1
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 1.3e-16 92.0 103 42.7
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.6e-15 86.7 73 61.6


User provided reference genes

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