Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.6e-186 655.2 328 100.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.6e-186 655.2 328 100.0
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.6e-183 646.0 328 98.5
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 5.1e-174 614.4 328 93.6
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.0e-162 575.9 328 85.1
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.5e-160 569.7 328 84.1
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 8.0e-159 563.9 328 83.2
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.9e-146 521.2 323 84.2
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.0e-145 520.4 323 84.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.4e-139 500.0 329 75.4
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.4e-139 500.0 327 74.0
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.2e-138 496.9 328 75.0
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 5.9e-138 494.6 326 73.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.0e-137 493.8 327 73.7
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.7e-137 493.0 328 74.1
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.9e-137 492.3 330 74.5
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 6.6e-137 491.1 324 73.5
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.9e-136 489.6 330 73.0
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.1e-135 486.1 328 72.3
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.3e-134 482.6 325 72.3
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 4.0e-134 481.9 328 71.3
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.8e-134 481.1 330 71.5
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.0e-133 479.6 329 70.5
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.0e-133 479.6 331 71.0
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 3.4e-133 478.8 327 72.2
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.4e-133 478.4 329 70.8
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 4.4e-133 478.4 328 71.3
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 9.8e-133 477.2 335 71.0
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 9.8e-133 477.2 327 70.9
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.3e-132 476.9 321 72.0
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 4.9e-132 474.9 328 69.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 4.9e-132 474.9 328 70.7
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.4e-132 474.6 324 69.4
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 6.4e-132 474.6 327 68.8
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 8.3e-132 474.2 325 72.0
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.1e-131 473.8 331 69.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.4e-131 473.4 330 71.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 3.2e-131 472.2 325 69.2
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.2e-131 472.2 324 69.4
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.2e-131 472.2 331 69.2
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 5.4e-131 471.5 330 70.6
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.4e-131 471.5 329 71.7
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 5.4e-131 471.5 325 71.1
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 5.4e-131 471.5 325 70.5
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 7.0e-131 471.1 324 70.7
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-130 470.3 325 68.9
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.6e-130 469.9 326 69.3
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.6e-130 469.9 331 70.1
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.6e-130 469.9 325 71.7
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.0e-130 469.5 324 68.8
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.6e-130 468.4 325 70.2
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 5.9e-130 468.0 330 70.0
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.3e-129 466.8 328 68.9
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.3e-129 466.8 333 70.0
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 1.1e-128 463.8 324 68.2
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.5e-128 463.4 329 69.9
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.3e-128 462.2 325 68.9
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 5.6e-128 461.5 322 70.8
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 2.1e-127 459.5 328 67.7
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 3.6e-127 458.8 325 69.2
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 6.2e-127 458.0 323 70.0
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.3e-126 456.1 322 68.3
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.2e-126 454.9 321 68.2
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.0e-125 453.0 326 67.8
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.4e-125 452.2 330 67.9
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 7.5e-125 451.1 330 67.0
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 9.8e-125 450.7 323 67.2
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.9e-124 449.1 319 69.0
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 4.9e-124 448.4 321 66.4
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.1e-123 447.2 324 66.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 4.1e-123 445.3 310 67.7
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 5.4e-123 444.9 325 67.4
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 9.2e-123 444.1 326 66.0
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 9.2e-123 444.1 328 68.3
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 2.7e-122 442.6 325 67.1
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 3.5e-122 442.2 330 68.2
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 6.0e-122 441.4 326 66.0
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 5.0e-121 438.3 323 65.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.5e-120 436.8 327 66.4
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 3.3e-120 435.6 334 65.6
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 5.6e-120 434.9 327 65.4
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 9.5e-120 434.1 324 64.2
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 2.1e-119 433.0 327 65.4
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 4.7e-119 431.8 372 60.2
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 6.2e-119 431.4 324 64.2
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 8.1e-119 431.0 327 64.5
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.1e-118 430.6 327 63.6
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.3e-118 429.5 327 66.1
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.6e-117 426.0 327 64.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 4.4e-117 425.2 325 63.1
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 4.4e-117 425.2 325 63.1
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 4.4e-117 425.2 327 63.3
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 7.5e-117 424.5 325 63.1
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.3e-116 423.7 324 62.7
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.2e-116 422.9 306 67.3
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 3.7e-116 422.2 327 64.5
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 9.2e-115 417.5 282 74.1
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 1.3e-113 413.7 326 62.0
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 3.9e-113 412.1 326 62.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 5.1e-113 411.8 332 62.3
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.1e-112 410.6 265 76.6
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 2.5e-112 409.5 326 61.7
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 5.6e-112 408.3 327 62.1
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 7.3e-112 407.9 323 64.4
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 9.5e-112 407.5 321 62.9
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.8e-110 403.3 305 62.6
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.8e-110 403.3 325 61.8
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 4.4e-109 398.7 419 53.9
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.6e-106 390.2 291 65.3
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.0e-105 387.5 294 63.9
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.3e-105 387.1 256 75.0
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 3.3e-104 382.5 326 58.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.7e-103 378.6 379 54.6
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.1e-102 377.5 328 58.5
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.3e-100 370.5 548 41.8
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-99 367.1 290 62.1
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.1e-94 349.4 328 56.4
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.0e-93 346.7 324 54.6
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.4e-91 339.7 686 34.7
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.0e-89 334.3 264 60.6
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 2.3e-89 333.2 272 60.3
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.8e-86 323.6 221 69.7
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.1e-83 314.3 309 51.1
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 4.2e-83 312.4 230 67.8
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.3e-80 302.4 313 48.6
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 9.6e-80 301.2 316 48.1
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 8.1e-79 298.1 259 59.8
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 8.4e-76 288.1 204 69.1
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 3.5e-74 282.7 309 46.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.1e-67 261.2 223 58.3
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 4.6e-66 255.8 178 71.9
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.4e-54 217.6 305 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 4.2e-43 179.5 197 43.7
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 5.2e-41 172.6 96 88.5
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.2e-36 157.1 96 78.1
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 8.5e-36 155.2 96 82.3
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 5.0e-28 129.4 123 56.1
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.1e-26 124.0 75 72.0
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.1e-26 124.0 86 67.4
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.0e-25 120.2 94 61.7
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 8.8e-25 118.6 94 61.7
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.4e-22 110.5 326 27.0
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.0e-21 107.5 88 60.2
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.0e-16 90.9 81 53.1
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.3e-15 88.2 69 63.8
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 1.0e-12 78.6 62 62.9
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 6.2e-10 69.3 56 57.1
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.4e-09 68.2 54 63.0
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.4e-09 68.2 54 63.0
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.8e-09 67.8 54 63.0
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 2.0e-08 64.3 53 62.3
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 4.4e-08 63.2 30 96.7
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.4e-08 63.2 30 96.7
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.4e-07 59.3 43 60.5


User provided reference genes

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