Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.1e-280 966.8 491 100.0
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-277 958.7 491 99.4
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 2.8e-277 958.0 491 99.2
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.0e-252 873.6 493 89.7
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.0e-251 870.5 493 89.5
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.9e-250 867.8 493 89.5
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 6.6e-250 867.1 493 89.0
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.8e-247 857.1 493 88.6
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 1.4e-239 832.8 494 85.4
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 2.5e-217 758.8 494 80.2
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 4.6e-195 684.9 492 69.3
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 9.7e-169 597.4 495 62.6
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.9e-165 585.9 496 61.5
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 4.7e-163 578.6 477 63.3
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.0e-161 573.2 475 62.7
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 4.5e-158 562.0 495 58.4
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.9e-157 559.3 491 65.0
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 9.4e-156 554.3 495 58.0
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.7e-155 552.7 495 57.8
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 2.7e-155 552.7 492 58.9
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 4.7e-155 552.0 493 57.8
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 1.4e-154 550.4 493 57.2
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.8e-154 550.1 498 59.2
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 8.8e-154 547.7 493 59.6
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 5.7e-153 545.0 495 57.8
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 7.5e-153 544.7 493 58.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.3e-152 541.6 492 57.3
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.4e-151 539.7 492 57.5
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.1e-151 539.3 492 57.3
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 7.0e-151 538.1 493 56.4
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 7.7e-150 534.6 488 57.8
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 6.6e-149 531.6 498 56.6
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.1e-147 525.0 492 56.7
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 2.3e-146 523.1 498 54.6
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 5.2e-146 521.9 496 54.6
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 5.2e-146 521.9 496 54.6
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 6.8e-146 521.5 487 55.9
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 8.9e-146 521.2 493 57.0
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.2e-145 520.8 498 56.6
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.6e-145 519.6 484 57.2
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.9e-144 515.4 495 54.7
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 6.3e-144 515.0 497 53.9
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.4e-143 513.8 495 54.3
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 2.4e-143 513.1 494 55.9
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 3.2e-143 512.7 495 54.7
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 5.4e-143 511.9 371 67.7
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 9.2e-143 511.1 495 54.3
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 2.0e-142 510.0 495 54.1
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 4.5e-142 508.8 496 53.8
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 4.5e-142 508.8 492 55.1
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 5.9e-142 508.4 493 54.4
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.3e-141 507.3 494 54.7
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 1.7e-141 506.9 480 54.4
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 2.3e-141 506.5 488 53.9
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 5.0e-141 505.4 483 56.9
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-140 503.8 495 53.3
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 3.3e-140 502.7 491 53.2
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.1e-139 500.0 488 53.1
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 8.0e-139 498.0 481 51.8
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.8e-138 496.9 495 53.1
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 4.0e-138 495.7 503 52.9
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 8.9e-138 494.6 481 51.6
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.2e-137 494.2 492 53.3
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 2.0e-137 493.4 487 53.0
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 9.8e-137 491.1 486 52.5
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 9.8e-137 491.1 481 53.6
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 2.9e-136 489.6 496 52.6
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 3.7e-136 489.2 495 52.7
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 4.9e-136 488.8 493 51.7
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 9.2e-135 484.6 492 52.2
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.2e-134 484.2 490 50.2
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 3.5e-134 482.6 492 51.6
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 6.0e-134 481.9 485 53.6
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.3e-133 480.7 491 49.1
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.3e-133 479.9 476 53.6
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 1.9e-132 476.9 489 51.9
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 5.6e-132 475.3 494 51.0
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 9.5e-132 474.6 494 53.6
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 2.1e-131 473.4 491 50.3
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 3.6e-131 472.6 490 50.6
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 3.6e-131 472.6 480 51.2
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.4e-130 470.7 486 50.8
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 1.3e-128 464.2 481 50.5
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 4.9e-128 462.2 541 47.1
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.4e-127 460.7 404 58.7
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 7.1e-127 458.4 491 50.5
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.2e-127 458.0 489 49.7
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 3.5e-126 456.1 484 51.0
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 3.5e-126 456.1 497 49.7
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 3.9e-125 452.6 372 62.1
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 8.6e-125 451.4 484 50.8
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 3.3e-124 449.5 484 50.4
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 1.2e-123 447.6 483 49.7
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 1.6e-123 447.2 486 50.0
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 4.7e-123 445.7 500 49.2
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 2.3e-122 443.4 486 49.2
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.2e-122 442.2 493 48.1
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 5.2e-122 442.2 494 48.4
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 8.9e-122 441.4 460 52.8
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.1e-119 434.5 486 48.6
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 3.2e-119 433.0 496 46.2
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.0e-117 426.4 496 46.2
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.5e-116 423.3 484 46.9
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.3e-116 422.9 493 47.5
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 1.5e-113 414.1 381 56.4
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 2.2e-112 410.2 484 46.3
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.9e-112 409.8 489 48.5
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 4.6e-110 402.5 327 63.0
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 6.0e-110 402.1 484 46.9
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.1e-107 393.7 478 47.5
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 7.6e-105 385.2 435 47.6
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 5.3e-98 362.5 413 47.0
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 2.4e-95 353.6 525 39.6
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.6e-94 350.9 409 48.2
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 6.7e-93 345.5 286 59.8
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 2.5e-92 343.6 465 43.4
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.3e-91 341.3 290 59.3
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 2.1e-91 340.5 474 42.6
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 3.1e-90 336.7 287 59.6
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 9.0e-90 335.1 286 59.4
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 9.6e-84 315.1 252 61.1
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 2.8e-83 313.5 466 41.0
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.0e-81 307.4 373 45.6
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 7.2e-79 298.9 500 36.6
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.4e-74 284.6 363 47.7
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.7e-72 277.7 411 41.6
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.1e-71 275.0 256 57.4
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 7.9e-70 268.9 355 41.1
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.8e-66 257.7 377 40.6
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.2e-65 255.0 416 38.5
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 2.7e-62 243.8 184 67.4
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-58 231.9 164 65.9
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 7.0e-58 229.2 233 51.9
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.0e-57 227.6 321 40.8
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 2.2e-56 224.2 184 62.0
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 2.9e-56 223.8 254 49.6
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.9e-56 223.8 542 31.9
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 4.2e-55 219.9 472 33.3
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-52 211.5 495 32.7
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 5.7e-52 209.5 489 33.3
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.7e-51 208.0 371 35.3
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 4.8e-51 206.5 471 31.8
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 8.5e-48 195.7 230 46.5
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.6e-46 191.4 146 67.8
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 4.7e-46 189.9 171 57.3
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-45 188.0 98 94.9
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 2.3e-45 187.6 590 28.5
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-44 185.3 417 33.6
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 5.7e-44 183.0 436 30.3
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 6.3e-43 179.5 455 30.5
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 3.8e-40 170.2 253 42.7
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 6.5e-40 169.5 368 32.9
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 2.5e-39 167.5 369 33.3
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 3.0e-37 160.6 259 38.6
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.4e-36 156.8 276 37.7
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 5.0e-32 143.3 186 39.8
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.0e-29 135.6 122 54.9
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 3.4e-28 130.6 128 53.1
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.3e-27 128.6 118 57.6
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.1e-26 125.6 93 63.4
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-23 115.5 151 43.7
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 2.5e-23 114.4 482 25.3
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 9.5e-23 112.5 133 46.6
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 1.6e-22 111.7 253 35.2
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 2.8e-22 110.9 132 46.2
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 4.4e-20 103.6 189 36.5
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 5.4e-18 96.7 144 42.4
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 1.3e-16 92.0 103 42.7
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.6e-15 86.7 73 61.6


User provided reference genes

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