Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.8e-128 462.6 233 100.0
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.8e-128 462.6 233 100.0
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 3.3e-127 458.4 233 99.1
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.5e-127 457.2 233 98.7
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.7e-126 456.1 233 98.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.0e-123 446.8 233 96.1
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-120 436.8 233 95.7
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-120 436.8 233 95.7
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.9e-98 362.8 235 81.7
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.2e-96 354.8 229 81.2
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 2.6e-95 352.4 234 79.9
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.3e-94 350.1 234 79.5
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.7e-94 349.7 231 77.9
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 2.2e-94 349.4 228 80.3
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 6.4e-94 347.8 233 80.3
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.9e-93 346.3 233 78.5
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.2e-93 345.5 231 77.9
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 7.0e-93 344.4 215 82.3
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 9.2e-93 344.0 231 77.5
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 3.5e-92 342.0 211 80.1
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.3e-91 340.1 211 81.0
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.0e-91 339.0 236 76.7
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.0e-91 338.2 229 76.9
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 6.6e-91 337.8 239 75.3
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 8.6e-91 337.4 231 79.2
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.1e-90 337.0 213 79.8
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 5.6e-90 334.7 208 79.3
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 7.3e-90 334.3 218 78.9
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.2e-89 333.6 213 79.8
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.2e-89 333.6 208 82.2
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.8e-89 332.4 213 79.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.6e-89 332.0 233 73.8
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 6.2e-89 331.3 216 77.8
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.2e-89 331.3 213 79.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 6.2e-89 331.3 209 79.4
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 8.1e-89 330.9 216 77.3
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 8.1e-89 330.9 216 77.3
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.8e-88 329.7 233 74.7
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.3e-88 329.3 216 76.9
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.2e-88 328.2 213 78.9
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 6.8e-88 327.8 235 74.5
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.2e-87 327.0 232 74.1
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.5e-87 326.6 217 77.0
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 2.6e-87 325.9 236 72.5
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 7.5e-87 324.3 231 74.0
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.3e-86 323.6 237 72.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.7e-86 323.2 211 77.7
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.2e-86 322.8 233 73.8
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 3.7e-86 322.0 239 72.4
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 4.9e-86 321.6 225 74.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 6.4e-86 321.2 235 74.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.9e-85 319.7 234 73.5
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.4e-85 319.3 236 71.6
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.4e-85 318.2 228 71.5
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 7.1e-85 317.8 234 71.8
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 9.2e-85 317.4 210 78.6
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 9.2e-85 317.4 210 78.6
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.3e-83 313.5 212 75.9
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.3e-83 312.8 212 75.5
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.9e-83 312.0 214 73.8
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 8.6e-83 310.8 207 75.4
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.1e-82 310.5 207 74.9
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.9e-82 309.7 235 70.2
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.9e-82 309.7 236 70.3
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.5e-82 309.3 235 71.9
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 5.6e-82 308.1 208 75.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 5.6e-82 308.1 237 69.2
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 9.5e-82 307.4 212 75.5
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 9.5e-82 307.4 210 73.3
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.1e-81 306.2 209 73.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.1e-81 306.2 250 67.2
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.4e-80 303.5 235 68.9
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.8e-80 303.1 236 68.2
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 3.1e-80 302.4 236 68.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 6.8e-80 301.2 223 70.9
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 8.9e-80 300.8 223 70.9
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.0e-79 299.7 207 73.4
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.6e-79 299.3 233 65.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 3.4e-79 298.9 227 70.0
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 4.4e-79 298.5 203 76.8
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.3e-78 297.0 211 70.6
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.9e-78 295.0 229 67.2
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.4e-78 294.7 216 69.9
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 6.4e-78 294.7 205 72.2
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.2e-77 292.4 219 67.6
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 4.1e-77 292.0 230 67.8
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 4.6e-76 288.5 226 68.1
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 4.6e-76 288.5 239 65.7
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.3e-75 286.2 201 70.6
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.0e-75 285.8 203 70.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 2.5e-74 282.7 233 68.2
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 7.3e-74 281.2 233 64.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 9.6e-74 280.8 233 67.8
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.1e-73 279.6 231 65.8
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.8e-73 279.3 207 70.0
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 6.2e-73 278.1 207 69.6
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 6.2e-73 278.1 214 66.4
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.1e-72 277.3 211 67.3
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 1.1e-72 277.3 233 62.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.4e-72 276.2 233 62.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.1e-72 275.8 211 67.8
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.9e-72 274.2 233 63.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.5e-71 273.5 208 68.8
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 4.4e-71 271.9 233 63.1
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-70 270.4 211 67.3
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-70 270.4 211 67.3
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.3e-70 270.4 211 67.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 6.4e-70 268.1 225 62.7
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.1e-69 267.3 238 61.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.1e-69 267.3 238 61.8
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 5.4e-69 265.0 229 63.3
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 9.3e-69 264.2 238 61.3
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.1e-68 263.1 238 60.5
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-68 262.7 238 60.5
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.6e-68 261.9 238 60.5
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 6.0e-68 261.5 230 60.4
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 6.0e-68 261.5 239 60.7
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 6.0e-68 261.5 229 62.9
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.9e-67 258.8 196 68.4
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.9e-67 258.8 201 64.2
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 5.1e-67 258.5 218 61.9
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 6.6e-67 258.1 212 62.3
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 3.1e-64 249.2 230 65.2
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 5.3e-64 248.4 213 64.8
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 8.4e-62 241.1 143 81.8
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 3.5e-60 235.7 230 57.0
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 8.1e-57 224.6 201 55.7
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 4.5e-55 218.8 196 61.7
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 4.9e-54 215.3 217 55.8
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-53 213.8 202 60.9
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 7.1e-53 211.5 166 64.5
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 3.9e-51 205.7 120 83.3
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 1.2e-44 184.1 131 72.5
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 4.6e-44 182.2 121 70.2
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 5.1e-43 178.7 202 50.5
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.3e-42 175.6 104 82.7
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.1e-40 169.1 102 80.4
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 5.3e-40 168.7 105 72.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.2e-21 105.9 115 53.9
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 3.1e-16 89.7 94 55.3
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 4.1e-08 62.8 198 26.3
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.7e-06 57.4 74 35.1
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.7e-06 57.4 74 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.9e-06 56.6 140 27.9
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 8.5e-06 55.1 96 34.4


User provided reference genes

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