Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.3e-64 247.3 126 100.0
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.3e-56 220.3 113 96.5
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.3e-56 220.3 113 96.5
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 2.0e-54 215.7 113 93.8
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 6.4e-48 194.1 113 86.7
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 4.9e-40 167.9 107 79.4
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.9e-40 167.9 107 79.4
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 8.3e-40 167.2 116 73.3
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.4e-39 164.5 107 77.6
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.4e-39 164.5 107 77.6
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 1.2e-38 163.3 118 72.9
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.6e-37 157.1 107 74.8
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 2.5e-36 155.6 118 68.6
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 1.3e-32 143.3 116 64.7
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 1.3e-32 143.3 117 65.0
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 4.9e-32 141.4 117 64.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 6.4e-32 141.0 101 65.3
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.1e-31 140.2 105 65.7
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.1e-31 140.2 114 62.3
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.4e-31 139.8 116 63.8
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 5.4e-31 137.9 101 62.4
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 7.1e-31 137.5 101 67.3
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 2.1e-30 136.0 101 61.4
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 2.7e-30 135.6 98 66.3
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 6.0e-30 134.4 101 61.4
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 7.8e-30 134.0 98 66.3
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 1.0e-29 133.7 90 68.9
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 2.3e-29 132.5 102 63.7
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 3.9e-29 131.7 114 59.6
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 2.5e-28 129.0 112 58.0
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 3.3e-28 128.6 99 62.6
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 4.3e-28 128.3 102 61.8
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 4.3e-28 128.3 109 57.8
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 7.3e-28 127.5 105 61.0
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 9.6e-28 127.1 99 63.6
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 9.6e-28 127.1 99 63.6
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 1.2e-27 126.7 103 62.1
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.6e-27 126.3 106 59.4
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 2.1e-27 125.9 105 61.9
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.1e-27 125.9 102 60.8
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 2.8e-27 125.6 107 62.6
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 2.8e-27 125.6 101 59.4
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 2.8e-27 125.6 110 55.5
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 2.8e-27 125.6 93 62.4
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 4.7e-27 124.8 106 56.6
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 4.7e-27 124.8 102 60.8
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 6.2e-27 124.4 101 59.4
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 6.2e-27 124.4 99 63.6
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 8.1e-27 124.0 99 58.6
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 8.1e-27 124.0 112 55.4
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.1e-26 123.6 107 55.1
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 1.4e-26 123.2 102 55.9
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 1.8e-26 122.9 102 53.9
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 1.8e-26 122.9 101 56.4
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 3.1e-26 122.1 111 57.7
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 3.1e-26 122.1 99 57.6
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 3.1e-26 122.1 101 57.4
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 3.1e-26 122.1 101 55.4
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 3.1e-26 122.1 99 63.6
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 4.0e-26 121.7 97 56.7
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 5.2e-26 121.3 95 60.0
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 6.8e-26 120.9 107 57.0
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 6.8e-26 120.9 107 57.9
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 6.8e-26 120.9 113 54.9
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 8.9e-26 120.6 102 60.8
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.2e-25 120.2 113 54.0
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 1.2e-25 120.2 99 53.5
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.5e-25 119.8 96 59.4
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.5e-25 119.8 105 55.2
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.5e-25 119.8 95 60.0
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.5e-25 119.8 109 56.0
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.0e-25 119.4 115 55.7
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 2.0e-25 119.4 101 52.5
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 2.0e-25 119.4 109 54.1
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.6e-25 119.0 113 53.1
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.6e-25 119.0 108 53.7
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 3.4e-25 118.6 96 60.4
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 3.4e-25 118.6 111 53.2
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 3.4e-25 118.6 99 56.6
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 4.4e-25 118.2 104 59.6
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 9.9e-25 117.1 106 55.7
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 9.9e-25 117.1 101 51.5
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.3e-24 116.7 98 58.2
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 1.3e-24 116.7 106 53.8
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.7e-24 116.3 101 57.4
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 1.7e-24 116.3 105 58.1
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.7e-24 116.3 102 54.9
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 2.2e-24 115.9 106 56.6
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 2.2e-24 115.9 101 56.4
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 2.2e-24 115.9 106 56.6
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 2.2e-24 115.9 106 56.6
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.9e-24 115.5 105 54.3
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.9e-24 115.5 101 56.4
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 3.8e-24 115.2 102 52.9
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 3.8e-24 115.2 117 50.4
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 4.9e-24 114.8 98 57.1
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 4.9e-24 114.8 101 51.5
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 4.9e-24 114.8 98 56.1
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 4.9e-24 114.8 102 48.0
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 6.4e-24 114.4 98 56.1
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 6.4e-24 114.4 101 52.5
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 8.4e-24 114.0 98 58.2
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 8.4e-24 114.0 98 58.2
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.1e-23 113.6 95 52.6
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.1e-23 113.6 98 56.1
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 1.4e-23 113.2 102 52.9
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.4e-23 113.2 102 52.9
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 1.9e-23 112.8 117 53.8
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.9e-23 112.8 105 54.3
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 7.1e-23 110.9 104 51.0
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.2e-22 110.2 78 62.8
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 1.6e-22 109.8 102 52.0
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 1.6e-22 109.8 102 52.0
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 1.5e-20 103.2 99 51.5
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 5.6e-20 101.3 130 43.8
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.1e-18 95.5 107 47.7
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.1e-18 95.5 107 47.7
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 7.6e-17 90.9 95 48.4
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 7.6e-17 90.9 103 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 9.9e-17 90.5 96 46.9
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 8.4e-16 87.4 100 45.0
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.9e-15 86.3 107 43.0
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.9e-15 86.3 66 56.1
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 4.2e-15 85.1 81 53.1
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 8.7e-13 77.4 85 47.1
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.9e-12 76.3 50 60.0
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 1.1e-10 70.5 35 85.7
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 9.0e-10 67.4 66 47.0
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 1.2e-09 67.0 31 87.1
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 3.4e-09 65.5 62 41.9
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 9.9e-09 63.9 34 76.5
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 1.7e-08 63.2 69 49.3
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 2.2e-08 62.8 68 52.9
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 3.8e-08 62.0 67 38.8
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 3.8e-08 62.0 35 68.6
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.2e-07 58.9 32 71.9
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.6e-06 56.6 39 56.4


User provided reference genes

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