Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 4.4e-84 314.7 171 100.0
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 5.9e-81 304.3 171 97.1
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.3e-80 303.1 171 92.4
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.3e-80 302.4 171 91.8
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.3e-80 302.4 171 91.8
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 2.9e-80 302.0 171 92.4
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.0e-77 293.5 171 92.4
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 1.0e-69 266.9 174 85.1
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 1.1e-53 213.8 177 66.7
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 1.6e-46 189.9 185 58.4
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 8.9e-45 184.1 166 67.5
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 8.4e-43 177.6 175 58.9
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 8.4e-43 177.6 175 58.9
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 8.4e-43 177.6 175 58.9
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 8.4e-43 177.6 153 58.2
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 4.2e-42 175.3 191 59.2
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 2.1e-41 172.9 182 56.0
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 2.1e-41 172.9 180 58.9
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 2.7e-41 172.6 157 59.9
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 3.5e-41 172.2 167 58.7
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 1.0e-40 170.6 171 57.9
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 1.0e-40 170.6 175 54.3
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 1.3e-40 170.2 182 55.5
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 3.0e-40 169.1 174 62.1
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 5.1e-40 168.3 175 61.1
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 5.1e-40 168.3 164 62.2
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 5.1e-40 168.3 181 53.6
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 6.6e-40 167.9 175 60.6
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 1.5e-39 166.8 175 54.3
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 2.5e-39 166.0 141 61.0
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 2.5e-39 166.0 184 56.0
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 4.3e-39 165.2 171 55.6
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 4.3e-39 165.2 181 53.0
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 5.6e-39 164.9 104 75.0
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 9.6e-39 164.1 104 74.0
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 9.6e-39 164.1 104 74.0
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 1.3e-38 163.7 175 61.1
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 2.1e-38 162.9 175 53.1
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 2.1e-38 162.9 168 54.2
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 8.1e-38 161.0 182 52.7
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 1.4e-37 160.2 104 71.2
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 1.8e-37 159.8 166 53.6
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 4.0e-37 158.7 171 56.1
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 4.0e-37 158.7 162 55.6
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 6.9e-37 157.9 189 54.5
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 2.0e-36 156.4 134 58.2
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 2.0e-36 156.4 189 55.0
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 5.8e-36 154.8 162 53.1
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 9.9e-36 154.1 104 70.2
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 9.9e-36 154.1 182 51.6
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 2.2e-35 152.9 112 69.6
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 2.2e-35 152.9 156 53.2
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 2.9e-35 152.5 168 53.0
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 4.9e-35 151.8 175 57.1
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 6.4e-35 151.4 173 57.2
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 6.4e-35 151.4 106 67.0
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 8.4e-35 151.0 192 52.1
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 1.1e-34 150.6 178 48.3
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 1.9e-34 149.8 156 58.3
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 5.4e-34 148.3 152 52.0
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 7.1e-34 147.9 104 66.3
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 7.1e-34 147.9 154 52.6
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 9.3e-34 147.5 165 55.8
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 9.3e-34 147.5 167 55.1
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 2.7e-33 146.0 134 58.2
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 7.8e-33 144.4 144 55.6
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 1.0e-32 144.1 107 66.4
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 1.3e-32 143.7 166 47.6
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.3e-32 143.7 129 57.4
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 2.3e-32 142.9 96 70.8
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 6.6e-32 141.4 111 61.3
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 8.7e-32 141.0 177 49.2
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 1.1e-31 140.6 163 51.5
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 2.5e-31 139.4 156 50.6
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 3.3e-31 139.0 104 63.5
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 3.3e-31 139.0 105 62.9
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 5.6e-31 138.3 163 52.8
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 1.6e-30 136.7 135 52.6
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 1.6e-30 136.7 154 52.6
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 1.6e-30 136.7 154 50.6
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 3.6e-30 135.6 128 53.1
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 2.4e-29 132.9 132 61.4
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 4.9e-27 125.2 110 54.5
HPP92_002073 Vanilla planifolia HOM05D007220 ORTHO05D009058 1.1e-26 124.0 101 55.4
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 1.4e-26 123.6 110 53.6
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 5.4e-26 121.7 80 70.0
Zm00001eb230760 Zea mays HOM05D007220 ORTHO05D009058 6.7e-24 114.8 115 49.6
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 1.5e-23 113.6 126 54.8
SEGI_29714 Sequoiadendron giganteum HOM05D007220 ORTHO05D009058 4.3e-23 112.1 143 49.0
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 1.3e-22 110.5 174 48.3
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 6.2e-22 108.2 73 69.9
ATR0730G016 Amborella trichopoda HOM05D007220 ORTHO05D009058 3.4e-20 102.4 110 49.1
AUR62035102 Chenopodium quinoa HOM05D007220 ORTHO05D009058 7.9e-17 91.3 180 38.9
MD07G1256600 Malus domestica HOM05D007220 ORTHO05D009058 1.3e-16 90.5 53 75.5
Pp3c26_11240 Physcomitrium patens HOM05D007220 ORTHO05D009058 8.7e-16 87.8 117 44.4
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 4.3e-15 85.5 120 45.0
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 4.3e-15 85.5 120 45.0
FAN17G2597 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.3e-14 84.0 109 52.3
AagrBONN_evm.TU.Sc2ySwM_228.5821 Anthoceros agrestis HOM05D007220 ORTHO05D009058 2.1e-14 83.2 88 50.0
MBI12_g20320_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 2.4e-13 79.7 44 75.0
Mapoly0002s0242 Marchantia polymorpha HOM05D007220 ORTHO05D009058 3.1e-13 79.3 91 44.0
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 3.1e-13 79.3 94 50.0
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 9.0e-13 77.8 139 42.4
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 2.6e-12 76.3 106 45.3
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 5.8e-12 75.1 47 66.0
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 5.5e-10 68.6 150 33.3
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 7.9e-09 64.7 58 55.2
MBI12_g25331_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 2.3e-08 63.2 61 52.5


User provided reference genes

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