Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 5225.6 2548 100.0
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 5203.3 2551 99.5
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 5188.2 2548 99.3
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 5093.1 2558 97.2
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 5071.9 2548 97.3
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 5070.4 2548 97.2
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 4744.9 2551 90.4
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 3904.8 2551 74.7
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 3712.5 2414 75.7
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 3300.4 2560 64.7
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 3222.2 2639 61.7
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 3182.1 2556 62.2
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 3149.0 2583 62.1
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 3139.0 2561 61.0
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 3085.0 2562 60.1
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 3072.0 2565 61.0
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 3066.6 2563 60.6
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 3050.4 2573 59.6
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 3031.1 2579 59.3
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 3021.5 2562 58.9
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2994.9 2557 59.0
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2992.6 2557 59.0
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2991.1 2563 59.2
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2986.4 2561 58.8
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2976.8 2558 58.8
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2920.2 2563 57.8
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2916.7 2563 57.5
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2856.2 2554 56.7
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2804.2 2561 55.8
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2800.0 2561 55.8
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2790.4 2560 55.0
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2774.2 2558 55.6
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2764.6 2560 55.5
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2755.7 2523 56.3
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2734.9 2574 54.9
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2734.5 2556 54.5
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2712.9 2554 54.8
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2709.9 2563 54.2
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2706.0 2563 54.1
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2694.1 2574 54.0
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2669.0 2585 53.7
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2650.9 2589 53.3
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2644.8 2627 53.4
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2598.9 2563 52.2
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2582.7 2576 53.1
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2582.4 2401 55.0
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2553.1 2582 52.6
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2499.2 2568 51.7
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2474.1 2552 52.4
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2464.1 2572 50.9
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2425.2 2586 50.2
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2423.7 2592 50.5
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2418.3 2581 50.0
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2415.6 2587 49.9
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2409.8 2577 50.3
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2386.7 2570 49.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2385.9 2566 50.3
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2381.7 2567 50.4
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2358.2 2565 49.5
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2342.4 2568 49.1
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2334.3 2581 49.2
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 2319.3 1939 60.3
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2308.5 2563 48.9
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2308.1 2551 48.3
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2306.6 2572 48.6
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2303.1 2563 48.8
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2297.3 2563 48.7
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2296.2 2549 48.3
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2294.6 2564 48.8
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2291.5 2564 48.8
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2238.0 2570 47.8
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2207.9 2561 47.4
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 2205.6 2590 46.9
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2173.7 2583 46.5
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2141.7 2562 46.3
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 2098.6 2432 47.5
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 2076.2 2579 44.6
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 2040.4 2555 45.0
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1994.5 1979 53.1
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1986.8 1880 53.9
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1834.7 2572 41.6
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1781.1 1933 50.6
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1680.6 2591 39.6
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1600.9 2571 38.0
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1533.5 1330 57.4
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1505.3 1372 55.0
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1461.8 1569 51.2
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1460.3 1527 52.5
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1446.4 1527 51.3
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1392.9 1367 52.6
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1281.9 1373 48.4
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1227.2 1104 57.7
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 0.0e+00 1111.3 1822 38.6
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 0.0e+00 1095.1 1368 46.1
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1093.6 1070 54.4
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 0.0e+00 1080.5 2801 30.0
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 3.5e-286 989.9 1071 50.8
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 3.5e-286 989.9 1071 50.8
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 5.6e-276 956.1 1097 49.8
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 1.5e-273 948.0 1198 44.4
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 3.9e-253 880.2 1037 44.9
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.3e-232 812.0 1578 35.0
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.3e-227 795.4 1197 39.9
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 5.5e-215 753.4 516 71.5
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.2e-213 746.9 580 63.8
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.0e-201 708.4 560 63.2
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.0e-192 679.5 638 55.0
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.5e-191 674.9 722 47.4
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 7.5e-188 663.3 764 49.3
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.2e-186 656.4 558 62.0
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.7e-184 652.1 1699 30.5
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.4e-178 630.6 1104 37.0
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 9.2e-170 603.2 487 63.9
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 9.9e-164 583.2 753 40.1
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 2.8e-150 538.5 431 59.9
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 1.4e-141 509.6 466 52.8
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.1e-120 438.0 541 48.1
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 9.7e-119 433.7 956 32.6
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.9e-114 419.5 2008 25.7
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.0e-112 413.7 289 68.5
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.7e-103 381.3 207 92.3
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 9.7e-103 380.6 231 81.0
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 1.3e-102 380.2 396 50.0
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 4.4e-87 328.6 639 34.4
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.2e-78 299.7 230 63.9
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 4.5e-76 292.0 184 76.1
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.6e-68 266.9 270 54.4
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.3e-66 259.2 218 58.3
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.4e-64 253.8 198 62.6
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 5.6e-58 231.9 226 48.2
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 4.9e-54 218.8 540 30.6
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.5e-52 212.6 114 90.4
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.5e-50 207.2 114 87.7
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 7.3e-50 204.9 302 41.4
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 6.8e-48 198.4 416 37.5
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 8.9e-48 198.0 120 79.2
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 5.8e-47 195.3 220 46.4
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.0e-43 184.5 121 72.7
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 1.3e-43 184.1 181 45.9
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 1.3e-43 184.1 181 45.9
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 6.6e-43 181.8 261 36.8
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 2.4e-37 163.3 118 69.5
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.5e-34 153.3 502 26.7
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 2.8e-33 149.8 235 36.2
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.4e-32 147.5 262 35.9
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.7e-30 140.6 234 36.3
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 2.4e-29 136.7 102 67.6
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 1.2e-28 134.4 88 76.1
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 2.1e-28 133.7 75 84.0
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 1.5e-23 117.5 239 32.2
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.8e-22 112.8 103 57.3
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 3.5e-20 106.3 120 50.8
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 4.6e-20 105.9 139 44.6
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 1.0e-19 104.8 154 40.9
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.8e-19 104.0 308 25.6
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 4.8e-17 95.9 121 43.0
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 4.2e-13 82.8 57 75.4
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 1.2e-12 81.3 50 78.0
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 8.7e-11 75.1 94 47.9
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 1.5e-10 74.3 57 63.2
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.9e-10 73.9 134 39.6
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.6e-10 72.4 123 33.3
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 1.1e-08 68.2 77 48.1
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 6.5e-06 58.9 83 36.1


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