Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.4e-201 706.1 357 100.0
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.7e-199 699.1 357 99.4
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 3.6e-197 691.4 357 98.3
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 2.8e-189 665.2 357 94.4
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 7.5e-187 657.1 357 94.4
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.7e-186 654.8 357 93.8
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 1.1e-148 530.4 355 76.9
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 2.2e-109 399.8 360 59.7
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 3.7e-109 399.1 355 59.2
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 4.1e-108 395.6 353 58.1
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 8.5e-106 387.9 344 60.5
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 1.5e-105 387.1 349 59.6
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 2.7e-104 382.9 344 59.0
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 8.0e-104 381.3 353 58.6
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 5.2e-103 378.6 351 57.0
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 8.8e-103 377.9 365 54.8
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 2.0e-102 376.7 365 54.8
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 2.6e-102 376.3 360 55.6
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 2.6e-102 376.3 355 56.6
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 1.1e-100 370.9 352 57.4
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 3.1e-100 369.4 360 54.2
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 3.8e-98 362.5 363 54.5
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 3.8e-98 362.5 354 55.6
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 1.9e-97 360.1 354 55.9
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 2.5e-97 359.8 361 54.3
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 8.0e-96 354.8 363 52.9
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.0e-95 354.4 351 55.0
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 1.5e-94 350.5 367 51.5
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 2.0e-94 350.1 280 58.9
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 2.6e-94 349.7 337 53.4
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.6e-94 349.7 356 53.9
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 2.8e-93 346.3 359 53.5
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 3.7e-93 345.9 351 55.8
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 6.3e-93 345.1 364 51.6
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 1.4e-92 344.0 350 53.1
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.2e-91 340.9 351 55.0
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 4.5e-91 339.0 340 55.0
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 7.7e-91 338.2 283 58.7
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.1e-89 334.3 351 52.1
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 1.9e-89 333.6 360 50.8
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 2.5e-89 333.2 350 52.0
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.6e-88 330.5 353 52.7
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 2.1e-88 330.1 280 57.9
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 6.1e-88 328.6 280 56.1
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.0e-87 327.8 414 46.9
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 3.0e-87 326.2 284 55.6
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 6.8e-87 325.1 320 54.4
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 3.4e-86 322.8 350 51.4
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 1.7e-85 320.5 360 49.7
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 2.2e-85 320.1 251 63.7
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 2.8e-85 319.7 356 49.7
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 6.3e-85 318.5 358 50.0
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 2.4e-84 316.6 356 49.4
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 2.4e-84 316.6 338 51.8
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 5.4e-84 315.5 362 50.6
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 2.0e-83 313.5 349 50.4
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 4.5e-83 312.4 333 52.3
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 5.9e-83 312.0 369 48.2
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 7.8e-83 311.6 367 46.6
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 1.0e-82 311.2 327 53.5
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 1.3e-82 310.8 349 50.1
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 1.5e-81 307.4 284 54.2
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 7.3e-81 305.1 280 54.6
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 9.5e-81 304.7 364 49.7
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 4.7e-80 302.4 341 51.6
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 8.0e-80 301.6 353 49.0
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 1.5e-78 297.4 267 60.7
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 4.4e-78 295.8 358 48.0
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 6.4e-77 292.0 279 52.3
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 7.0e-76 288.5 350 46.3
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 9.2e-76 288.1 435 43.0
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 2.3e-74 283.5 369 45.3
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 5.0e-74 282.3 297 49.5
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 3.6e-72 276.2 337 47.5
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 6.2e-72 275.4 376 44.4
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 1.8e-71 273.9 352 46.3
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 2.3e-71 273.5 352 46.3
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 8.9e-71 271.6 359 44.8
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 9.8e-70 268.1 206 62.1
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.7e-69 267.3 361 43.5
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 7.8e-67 258.5 301 47.8
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.0e-66 258.1 362 43.6
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 1.7e-66 257.3 365 45.8
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 3.3e-65 253.1 366 41.8
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 9.5e-65 251.5 253 55.7
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 2.0e-62 243.8 373 42.1
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 1.9e-57 227.3 416 38.9
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 2.1e-56 223.8 245 51.8
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 2.8e-56 223.4 261 50.6
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 6.8e-55 218.8 255 49.8
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 2.0e-54 217.2 560 32.3
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.1e-52 211.5 369 39.3
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.6e-46 190.3 163 59.5
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 2.6e-46 190.3 347 38.6
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 6.4e-45 185.7 258 46.1
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 2.1e-40 170.6 267 37.1
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 4.8e-40 169.5 182 47.3
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 1.8e-39 167.5 221 44.8
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 5.6e-33 146.0 163 45.4
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 5.3e-31 139.4 103 64.1
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 5.5e-28 129.4 342 28.4
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 2.5e-20 104.0 109 52.3
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 4.6e-19 99.8 231 34.2
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 6.0e-19 99.4 171 32.7
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 2.3e-18 97.4 118 45.8
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 1.3e-16 91.7 109 46.8
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 1.6e-16 91.3 111 45.0
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 1.1e-12 78.6 234 26.9
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 1.2e-11 75.1 60 55.0
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 4.6e-11 73.2 377 24.1
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.5e-09 68.2 44 61.4
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 3.3e-09 67.0 37 81.1
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 6.3e-08 62.8 164 25.0
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 6.3e-08 62.8 120 34.2
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 1.8e-07 61.2 83 42.2
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 9.1e-07 58.9 47 55.3
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 7.7e-06 55.8 78 39.7


User provided reference genes

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