Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 2524.6 1295 100.0
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 0.0e+00 2495.3 1295 98.9
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 2491.5 1295 98.9
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 2397.1 1295 94.7
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 2345.1 1294 93.3
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 0.0e+00 1952.2 1308 78.7
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 0.0e+00 1328.2 1340 57.9
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 0.0e+00 1174.8 1287 54.9
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 0.0e+00 1120.5 1299 53.1
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 5.6e-256 888.6 1373 45.2
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.2e-237 827.8 1409 43.3
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 4.4e-229 799.3 1366 43.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.9e-224 783.9 1517 41.0
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 4.8e-223 779.2 1510 39.8
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.1e-211 741.5 1381 41.1
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 9.3e-211 738.4 1381 41.0
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 4.1e-198 696.4 1366 39.2
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 4.5e-197 693.0 1421 38.6
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 8.2e-191 672.2 1284 38.9
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 2.6e-189 667.2 1279 39.6
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 5.0e-188 662.9 1321 38.0
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 7.2e-187 659.1 1437 37.1
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.2e-186 658.3 1431 37.5
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 6.1e-186 656.0 1437 36.8
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.4e-185 654.8 1328 38.3
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 8.8e-185 652.1 1441 36.2
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 9.1e-182 642.1 1427 37.8
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 7.7e-181 639.0 1423 37.0
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.2e-179 633.3 1326 37.9
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 4.7e-178 629.8 1390 37.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.3e-172 611.7 1324 37.2
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.0e-169 602.1 1425 35.2
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 3.0e-169 600.5 1337 38.6
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 4.4e-168 596.7 1368 36.1
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 4.4e-168 596.7 1446 36.9
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 5.9e-165 586.3 1344 37.8
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 8.5e-164 582.4 1255 38.5
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 4.4e-160 570.1 1385 36.2
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 7.5e-160 569.3 1454 35.2
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 9.8e-160 568.9 1370 36.7
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 3.1e-158 563.9 1370 36.6
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 5.4e-158 563.1 1395 36.8
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 1.0e-156 558.9 1400 36.8
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.7e-151 541.6 1368 34.9
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 9.2e-150 535.8 1467 32.8
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.7e-148 531.6 1121 38.3
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 2.1e-138 498.0 1386 34.1
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 3.6e-138 497.3 1379 33.9
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.1e-130 471.5 1431 34.1
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 2.0e-120 438.3 1334 32.6
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 3.2e-118 431.0 1380 33.4
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 9.6e-115 419.5 1387 31.4
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.1e-113 416.0 1393 31.3
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 9.9e-112 409.5 1330 31.7
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.3e-111 409.1 1377 32.3
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.4e-110 404.8 1426 28.9
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 6.6e-108 396.7 1402 30.8
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 6.6e-108 396.7 1351 31.8
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 1.1e-105 389.4 1434 30.0
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 6.9e-105 386.7 1409 30.7
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.7e-101 374.8 1339 30.8
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 2.3e-100 371.7 1360 31.5
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.3e-98 365.9 1335 30.6
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 2.7e-93 348.2 960 34.9
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.4e-87 326.6 1372 29.4
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 1.9e-83 315.5 1366 28.9
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 3.3e-83 314.7 296 61.5
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.3e-83 314.3 1432 28.5
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 6.1e-77 293.9 560 40.2
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.4e-73 282.7 931 30.0
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 8.5e-71 273.5 898 33.3
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 4.4e-67 261.2 1372 27.4
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-62 246.1 1061 28.4
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 9.4e-62 243.4 716 33.1
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 7.0e-57 227.3 778 33.5
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.5e-56 224.6 1396 26.6
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 5.9e-56 224.2 1171 26.6
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 3.6e-53 214.9 1494 26.5
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 4.0e-52 211.5 751 31.3
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 4.4e-51 208.0 1128 28.0
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.3e-50 206.5 679 32.0
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 9.1e-49 200.3 724 31.1
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.2e-47 195.7 698 29.2
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 4.2e-46 191.4 771 28.9
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 5.5e-46 191.0 1344 27.0
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 1.3e-42 179.9 1226 27.2
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 2.2e-42 179.1 1223 26.2
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 4.1e-41 174.9 1344 25.9
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 4.1e-41 174.9 1010 27.7
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.5e-38 165.6 1352 25.6
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.8e-36 159.5 378 34.7
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 1.5e-35 156.4 1325 25.4
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 4.4e-35 154.8 785 27.6
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 7.5e-35 154.1 636 30.2
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 9.8e-35 153.7 1309 24.8
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 4.3e-30 138.3 1470 24.8
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.0e-28 131.7 1359 23.9
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 1.4e-25 123.2 476 30.3
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 9.2e-25 120.6 1053 25.2
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-24 120.2 321 33.3
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 4.6e-24 118.2 455 30.3
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.7e-23 116.3 672 27.8
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 3.9e-23 115.2 1060 24.9
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 3.1e-20 105.5 354 32.8
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 5.2e-20 104.8 1341 22.7
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.3e-18 100.1 360 30.8
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 4.9e-18 98.2 1335 23.1
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.4e-17 96.7 386 30.6
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 3.2e-17 95.5 1103 25.2
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.1e-17 95.1 327 33.0
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 2.7e-16 92.4 1321 23.8
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 6.0e-16 91.3 840 24.6
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.7e-15 89.7 965 24.0
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 1.5e-14 86.7 1100 25.2
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 1.8e-12 79.7 269 34.2
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 4.0e-12 78.6 1485 23.0
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 1.5e-11 76.6 1305 24.1
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 3.4e-11 75.5 1301 22.8
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 3.7e-10 72.0 159 34.0
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 6.4e-10 71.2 143 35.7
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.9e-09 69.7 683 24.9
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.6e-08 65.1 128 37.5
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 6.0e-08 64.7 148 33.8
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 7.8e-08 64.3 46 67.4
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 5.1e-07 61.6 777 24.1
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.1e-06 60.5 43 65.1
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.1e-06 60.5 43 65.1
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.1e-06 60.5 89 37.1
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 3.3e-06 58.9 235 32.3
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 4.3e-06 58.5 130 34.6
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 7.3e-06 57.8 780 24.1


User provided reference genes

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