Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 4.7e-188 661.0 319 100.0
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.1e-187 657.5 319 99.4
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 3.7e-185 651.4 319 99.1
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.2e-183 646.4 319 96.6
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.0e-183 645.6 319 96.6
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.5e-182 640.6 319 95.9
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 8.8e-179 630.2 308 97.4
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 3.0e-171 605.1 319 91.2
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 7.8e-143 510.8 321 77.6
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 3.5e-135 485.3 322 72.4
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 2.0e-130 469.5 321 70.4
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 9.2e-128 460.7 321 69.5
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.8e-123 446.4 300 68.7
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 8.9e-123 444.1 325 65.8
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.2e-122 443.7 300 68.7
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 2.2e-121 439.5 302 68.2
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 8.4e-121 437.6 321 65.7
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 7.1e-120 434.5 301 67.4
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 2.1e-119 433.0 333 64.9
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 6.0e-119 431.4 318 64.5
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.3e-118 430.3 304 64.5
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 2.3e-118 429.5 332 64.8
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 5.1e-118 428.3 302 65.2
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 8.7e-118 427.6 303 64.4
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 1.1e-117 427.2 303 65.0
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 1.5e-117 426.8 300 66.3
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 1.5e-117 426.8 300 66.3
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 1.9e-117 426.4 302 65.9
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 2.5e-117 426.0 274 70.8
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 4.3e-117 425.2 274 69.7
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 7.3e-117 424.5 300 63.0
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.1e-116 422.9 300 66.7
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 2.4e-115 419.5 305 63.6
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 6.9e-115 417.9 302 64.9
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 9.0e-115 417.5 274 69.7
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 3.4e-114 415.6 302 65.2
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 5.8e-114 414.8 303 63.4
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 2.2e-113 412.9 301 63.5
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 3.8e-113 412.1 303 61.4
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.1e-112 410.6 303 61.1
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.4e-112 410.2 307 62.9
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 2.4e-112 409.5 303 62.0
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 3.5e-111 405.6 274 68.6
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 3.5e-111 405.6 301 62.8
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 7.9e-111 404.4 303 60.7
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 2.3e-110 402.9 302 60.6
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 3.9e-110 402.1 281 66.5
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 5.1e-110 401.7 308 63.0
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 5.1e-110 401.7 303 61.1
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 1.5e-109 400.2 271 66.1
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 4.3e-109 398.7 273 66.7
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 9.6e-109 397.5 276 65.9
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 9.6e-109 397.5 294 63.6
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 3.6e-108 395.6 307 60.9
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 6.2e-108 394.8 294 62.6
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 8.1e-108 394.4 286 64.3
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 1.1e-107 394.0 294 62.6
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.1e-107 394.0 302 62.3
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.8e-107 393.3 272 65.8
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 4.0e-107 392.1 294 62.6
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 9.0e-107 391.0 279 64.5
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 5.8e-106 388.3 302 61.6
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 5.8e-106 388.3 319 58.3
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 2.9e-105 386.0 305 59.7
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 4.2e-104 382.1 303 59.4
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 9.3e-104 380.9 281 62.6
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 9.3e-104 380.9 296 60.8
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 9.3e-104 380.9 302 60.3
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.2e-103 380.6 302 59.6
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 1.2e-103 380.6 274 59.9
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 1.6e-103 380.2 294 60.2
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 3.0e-102 375.9 303 58.4
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 6.7e-102 374.8 263 66.2
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 1.9e-101 373.2 324 59.9
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.3e-100 370.5 326 57.1
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 1.4e-99 367.1 327 56.6
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 3.4e-98 362.5 282 57.4
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 1.0e-97 360.9 301 55.1
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 1.7e-97 360.1 282 57.4
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.2e-95 354.0 301 54.2
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 1.2e-95 354.0 271 62.4
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 1.1e-93 347.4 285 58.6
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 2.5e-93 346.3 246 63.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 4.8e-92 342.0 268 60.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.0e-89 334.3 290 56.2
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 1.5e-85 320.5 332 50.0
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 4.3e-85 318.9 337 52.2
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 1.1e-83 314.3 240 63.3
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 1.4e-83 313.9 214 64.5
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.1e-83 312.8 268 56.7
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 2.9e-81 306.2 302 51.0
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 5.0e-81 305.4 230 61.7
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.4e-80 303.9 294 52.7
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 1.2e-79 300.8 337 46.9
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 1.1e-75 287.7 274 51.1
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 2.4e-75 286.6 189 69.8
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 3.1e-75 286.2 190 69.5
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 3.4e-74 282.7 274 50.4
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 4.5e-74 282.3 276 51.8
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 1.0e-73 281.2 315 48.3
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 1.7e-73 280.4 190 68.9
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-72 277.7 255 53.7
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 3.7e-68 262.7 176 67.6
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 1.6e-66 257.3 304 45.1
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.2e-63 247.7 296 43.6
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 1.0e-62 244.6 312 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 9.7e-61 238.0 250 47.2
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 9.1e-59 231.5 279 43.0
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.6e-58 230.7 190 59.5
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.2e-57 226.9 281 43.1
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.7e-55 219.2 187 56.1
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 1.4e-54 217.6 207 54.6
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 5.2e-54 215.7 191 53.4
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 7.7e-50 201.8 188 50.5
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.0e-49 201.4 192 52.6
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 6.5e-49 198.7 309 35.0
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.5e-48 197.6 317 35.3
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 5.5e-48 195.7 277 38.6
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.2e-47 194.5 271 39.9
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 4.0e-46 189.5 117 73.5
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 1.5e-45 187.6 126 66.7
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 5.4e-43 179.1 252 36.9
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 6.6e-41 172.2 127 59.1
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 6.6e-41 172.2 119 67.2
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.8e-39 166.8 135 58.5
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 4.0e-38 162.9 220 39.1
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 5.2e-38 162.5 169 51.5
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 5.2e-38 162.5 119 63.9
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 8.3e-36 155.2 123 60.2
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 1.7e-33 147.5 105 65.7
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 8.0e-31 138.7 119 52.9
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 4.9e-28 129.4 126 54.0
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 1.9e-27 127.5 106 59.4
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 2.8e-23 113.6 131 44.3
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.1e-22 110.2 93 55.9
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 3.4e-21 106.7 97 53.6
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.7e-20 104.4 64 75.0
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 5.4e-19 99.4 180 35.6
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 5.4e-19 99.4 73 63.0
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.9e-17 93.2 62 62.9
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 9.5e-16 88.6 65 66.2
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 6.2e-15 85.9 63 57.1
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 2.9e-12 77.0 61 54.1
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 6.4e-12 75.9 85 38.8
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 2.3e-09 67.4 95 38.9
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 4.3e-08 63.2 52 44.2
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 4.7e-07 59.7 43 60.5


User provided reference genes

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