Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.2e-50 203.0 107 100.0
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-50 203.0 107 100.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.4e-50 201.4 107 99.1
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.8e-50 200.7 107 99.1
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.2e-48 194.9 107 98.1
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 5.6e-45 184.1 107 92.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.5e-45 183.3 107 90.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 9.0e-27 123.6 99 72.7
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 7.9e-23 110.5 102 69.6
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.3e-20 103.2 100 66.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.5e-18 94.7 100 60.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 5.8e-18 94.4 110 55.5
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.9e-17 92.0 104 56.7
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.4e-16 89.7 95 61.1
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-15 86.7 101 60.4
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 4.6e-15 84.7 107 50.5
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.9e-15 84.0 99 56.6
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 8.7e-14 80.5 93 53.8
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.1e-13 80.1 102 52.9
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.1e-13 80.1 110 50.9
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.9e-13 79.3 94 51.1
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 3.3e-13 78.6 108 49.1
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.6e-13 77.8 108 49.1
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 5.6e-13 77.8 94 51.1
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.6e-13 77.8 96 53.1
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.4e-13 77.4 93 52.7
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.3e-12 76.6 101 44.6
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-12 76.6 106 49.1
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-12 76.6 95 53.7
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.3e-12 76.6 102 49.0
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.6e-12 76.3 108 45.4
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.8e-12 75.5 95 49.5
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.8e-12 75.5 116 48.3
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 2.8e-12 75.5 100 52.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.7e-12 75.1 112 48.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 3.7e-12 75.1 93 48.4
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 8.2e-12 73.9 95 50.5
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 8.2e-12 73.9 93 47.3
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 8.2e-12 73.9 94 48.9
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-11 73.2 96 49.0
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-11 73.2 96 49.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.4e-11 73.2 96 49.0
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.4e-11 73.2 120 46.7
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.4e-11 73.2 107 52.3
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.4e-11 73.2 92 52.2
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.8e-11 72.8 95 48.4
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-11 72.4 96 49.0
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 2.4e-11 72.4 96 49.0
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 2.4e-11 72.4 96 49.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 3.1e-11 72.0 96 49.0
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 3.1e-11 72.0 95 48.4
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 4.0e-11 71.6 79 55.7
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 4.0e-11 71.6 99 45.5
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 5.3e-11 71.2 107 44.9
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 5.3e-11 71.2 96 47.9
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 5.3e-11 71.2 96 50.0
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 5.3e-11 71.2 96 50.0
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 5.3e-11 71.2 94 47.9
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 5.3e-11 71.2 101 52.5
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 6.9e-11 70.9 96 49.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 6.9e-11 70.9 96 51.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.9e-11 70.9 95 51.6
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 6.9e-11 70.9 89 50.6
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 9.0e-11 70.5 111 47.7
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 9.0e-11 70.5 104 45.2
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-10 70.1 96 49.0
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.2e-10 70.1 92 51.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.2e-10 70.1 92 50.0
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.2e-10 70.1 104 52.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.5e-10 69.7 92 52.2
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.5e-10 69.7 106 50.9
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.5e-10 69.7 92 51.1
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.0e-10 69.3 115 40.9
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.0e-10 69.3 96 51.0
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 2.0e-10 69.3 94 52.1
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.6e-10 68.9 94 46.8
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.6e-10 68.9 94 48.9
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.6e-10 68.9 94 47.9
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.4e-10 68.6 94 46.8
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.4e-10 68.6 114 46.5
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 3.4e-10 68.6 109 49.5
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.5e-10 68.2 95 46.3
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 4.5e-10 68.2 100 51.0
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 5.8e-10 67.8 92 51.1
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 7.6e-10 67.4 92 47.8
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.6e-10 67.4 103 49.5
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.6e-10 67.4 94 46.8
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 7.6e-10 67.4 93 51.6
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.0e-09 67.0 91 51.6
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 1.0e-09 67.0 95 47.4
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.0e-09 67.0 104 44.2
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-09 66.6 95 46.3
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 94 46.8
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 76 56.6
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.7e-09 66.2 96 46.9
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.2e-09 65.9 93 46.2
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.9e-09 65.5 92 48.9
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.9e-09 65.5 92 47.8
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.9e-09 65.5 92 47.8
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.8e-09 65.1 95 45.3
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.8e-09 65.1 98 43.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.9e-09 64.7 95 47.4
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.9e-09 64.7 71 53.5
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 8.4e-09 63.9 92 44.6
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 8.4e-09 63.9 92 44.6
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 8.4e-09 63.9 92 44.6
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 8.4e-09 63.9 94 47.9
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 1.1e-08 63.5 93 45.2
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.1e-08 63.5 92 42.4
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-08 63.5 94 45.7
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 96 46.9
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.4e-08 63.2 93 46.2
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 1.4e-08 63.2 70 50.0
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.4e-08 63.2 98 43.9
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.9e-08 62.8 103 42.7
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.9e-08 62.8 95 47.4
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 92 45.7
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 94 43.6
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 2.5e-08 62.4 115 40.9
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 2.5e-08 62.4 104 43.3
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 3.2e-08 62.0 93 49.5
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.2e-08 62.0 95 47.4
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 4.2e-08 61.6 63 57.1
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.2e-08 61.6 76 53.9
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.5e-08 61.2 93 44.1
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.5e-08 61.2 101 39.6
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.1e-08 60.8 103 43.7
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 7.1e-08 60.8 101 43.6
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 1.2e-07 60.1 94 45.7
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.6e-07 59.7 78 46.2
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.6e-07 59.7 95 44.2
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.6e-07 59.7 93 46.2
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.6e-07 59.7 94 43.6
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-07 59.3 92 46.7
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 2.7e-07 58.9 93 40.9
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 3.5e-07 58.5 102 44.1
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.5e-07 58.5 103 40.8
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 3.5e-07 58.5 83 49.4
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 4.6e-07 58.2 95 43.2
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.6e-07 58.2 104 40.4
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 4.6e-07 58.2 107 40.2
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 4.6e-07 58.2 73 47.9
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.9e-07 57.4 97 43.3
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.3e-06 56.6 101 42.6
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.8e-06 56.2 93 47.3
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 2.3e-06 55.8 43 67.4
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.3e-06 55.8 98 42.9
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 3.0e-06 55.5 94 45.7
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 3.0e-06 55.5 56 57.1
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 3.0e-06 55.5 63 55.6
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 3.9e-06 55.1 43 65.1
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 3.9e-06 55.1 43 65.1
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 3.9e-06 55.1 67 46.3
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 3.9e-06 55.1 98 43.9
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 3.9e-06 55.1 59 55.9
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.9e-06 55.1 94 40.4
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 5.1e-06 54.7 97 43.3
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 5.1e-06 54.7 41 70.7
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 8.7e-06 53.9 61 52.5


User provided reference genes

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