Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.9e-38 161.4 80 100.0
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.5e-31 139.0 85 83.5
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.9e-31 137.1 85 83.5
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-30 135.2 85 80.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-30 134.8 85 80.0
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-30 134.8 85 80.0
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.0e-30 134.0 86 79.1
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.0e-30 134.0 86 79.1
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.9e-29 132.1 85 78.8
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.5e-29 131.7 85 78.8
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.2e-29 131.0 86 77.9
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 7.2e-29 130.2 85 78.8
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.7e-28 128.3 85 77.6
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 4.6e-28 127.5 85 75.3
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 4.6e-28 127.5 86 74.4
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 2.3e-27 125.2 85 72.9
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 3.9e-27 124.4 86 69.8
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.1e-26 122.9 85 70.6
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 3.3e-26 121.3 85 69.4
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 5.7e-26 120.6 85 68.2
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 9.7e-26 119.8 85 70.6
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.3e-25 119.4 84 69.0
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.3e-25 119.4 85 70.6
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.7e-25 119.0 85 70.6
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.7e-25 119.0 85 70.6
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.7e-25 119.0 85 69.4
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.2e-25 118.6 85 69.4
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.2e-25 118.6 85 69.4
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 2.2e-25 118.6 85 68.2
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.8e-25 118.2 85 70.6
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 2.8e-25 118.2 85 69.4
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.8e-25 118.2 85 69.4
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 3.7e-25 117.9 85 69.4
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.7e-25 117.9 85 70.6
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 3.7e-25 117.9 85 69.4
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 3.7e-25 117.9 85 70.6
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.7e-25 117.9 85 70.6
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 4.8e-25 117.5 85 69.4
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.8e-25 117.5 85 69.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 4.8e-25 117.5 85 68.2
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 4.8e-25 117.5 85 68.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.3e-25 117.1 85 74.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 6.3e-25 117.1 85 68.2
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 6.3e-25 117.1 85 68.2
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 8.2e-25 116.7 85 67.1
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 8.2e-25 116.7 85 67.1
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 8.2e-25 116.7 85 67.1
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.1e-24 116.3 85 68.2
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.4e-24 115.9 85 64.7
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.4e-24 115.9 85 68.2
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.4e-24 115.9 85 68.2
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.4e-24 115.9 85 68.2
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.4e-24 115.9 85 67.1
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 1.8e-24 115.5 85 67.1
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.8e-24 115.5 85 68.2
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.8e-24 115.5 85 68.2
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.4e-24 115.2 85 65.9
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 2.4e-24 115.2 86 68.6
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.1e-24 114.8 85 67.1
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.1e-24 114.8 85 67.1
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 3.1e-24 114.8 85 65.9
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.1e-24 114.8 85 69.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 3.1e-24 114.8 86 67.4
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.1e-24 114.8 85 67.1
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 3.1e-24 114.8 85 68.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 4.1e-24 114.4 85 67.1
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 4.1e-24 114.4 85 67.1
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 4.1e-24 114.4 85 67.1
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 5.3e-24 114.0 85 64.7
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 5.3e-24 114.0 85 64.7
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 5.3e-24 114.0 85 63.5
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 5.3e-24 114.0 85 67.1
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.3e-24 114.0 85 67.1
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 5.3e-24 114.0 85 65.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.9e-24 113.6 85 67.1
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 9.1e-24 113.2 86 64.0
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 9.1e-24 113.2 85 68.2
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 9.1e-24 113.2 85 65.9
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.1e-24 113.2 85 67.1
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.2e-23 112.8 85 64.7
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.2e-23 112.8 85 63.5
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.5e-23 112.5 85 65.9
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.5e-23 112.5 85 64.7
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.5e-23 112.5 85 64.7
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.0e-23 112.1 85 65.9
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.6e-23 111.7 85 65.9
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.4e-23 111.3 85 64.7
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 3.4e-23 111.3 85 63.5
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.4e-23 111.3 85 65.9
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.4e-23 111.3 85 62.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 3.4e-23 111.3 85 65.9
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 4.5e-23 110.9 85 65.9
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 4.5e-23 110.9 85 63.5
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 4.5e-23 110.9 84 63.1
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 5.9e-23 110.5 85 63.5
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 5.9e-23 110.5 87 64.4
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 5.9e-23 110.5 85 63.5
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 5.9e-23 110.5 85 63.5
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 5.9e-23 110.5 85 63.5
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.9e-23 110.5 85 65.9
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 5.9e-23 110.5 85 62.4
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 7.7e-23 110.2 85 63.5
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 7.7e-23 110.2 85 63.5
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 7.7e-23 110.2 85 60.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.0e-22 109.8 85 64.7
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.0e-22 109.8 90 65.6
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.0e-22 109.8 85 64.7
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.3e-22 109.4 85 60.0
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.3e-22 109.4 85 65.9
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.7e-22 109.0 86 60.5
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.7e-22 109.0 85 63.5
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.9e-22 108.2 85 63.5
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.9e-22 108.2 85 64.7
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.9e-22 108.2 85 64.7
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.8e-22 107.8 73 69.9
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.8e-22 107.8 73 68.5
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 8.5e-22 106.7 87 62.1
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.5e-21 105.1 85 61.2
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 3.2e-21 104.8 85 60.0
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 4.2e-21 104.4 87 58.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 4.2e-21 104.4 85 57.6
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 5.5e-21 104.0 73 67.1
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 5.5e-21 104.0 85 63.5
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 9.4e-21 103.2 85 58.8
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.7e-20 101.7 84 60.7
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 4.7e-20 100.9 85 60.0
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 6.1e-20 100.5 98 56.1
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.1e-20 100.5 86 58.1
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 7.9e-20 100.1 85 60.0
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 3.0e-19 98.2 96 56.2
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 8.8e-19 96.7 85 57.6
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.1e-18 96.3 86 55.8
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.5e-18 95.9 86 57.0
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.6e-18 95.1 85 56.5
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-18 94.7 72 65.3
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 4.4e-18 94.4 91 57.1
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 5.7e-18 94.0 85 60.0
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 7.4e-18 93.6 73 64.4
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.7e-17 92.4 85 55.3
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.7e-17 92.4 86 54.7
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 3.7e-17 91.3 85 54.1
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 4.8e-17 90.9 85 55.3
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 4.8e-17 90.9 72 61.1
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 4.1e-16 87.8 86 54.7
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-15 85.9 87 58.6
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.0e-15 85.5 85 51.8
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 2.6e-15 85.1 63 68.3
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.2e-14 82.0 167 34.1
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 7.2e-13 77.0 86 48.8
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.5e-10 69.3 38 84.2
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 4.4e-10 67.8 64 50.0
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 5.7e-10 67.4 66 48.5
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.8e-09 65.1 48 68.8
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 8.2e-09 63.5 42 71.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 3.1e-08 61.6 84 42.9
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.9e-07 57.4 77 40.3


User provided reference genes

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