Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.4e-208 728.0 353 100.0
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 2.2e-207 725.3 353 99.4
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.5e-207 723.8 353 99.4
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.0e-204 714.9 355 98.3
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.5e-203 711.8 359 96.4
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.8e-193 679.1 353 93.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.1e-193 676.8 446 78.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.4e-180 636.3 349 87.4
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.5e-179 632.9 349 87.4
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 3.1e-177 625.2 363 82.4
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 2.9e-175 618.6 365 81.6
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.8e-175 618.2 348 83.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.9e-174 615.9 362 81.8
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.5e-174 615.5 364 81.0
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.5e-174 615.5 362 82.6
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.2e-174 615.1 346 83.8
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 4.2e-174 614.8 356 82.3
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.2e-173 613.2 362 82.0
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.6e-173 612.8 364 81.3
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 2.1e-173 612.5 349 83.7
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.7e-173 612.1 358 82.4
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.0e-172 610.1 349 84.2
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.4e-172 609.8 353 83.0
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.8e-172 609.4 362 81.5
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.8e-172 609.4 360 81.9
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.0e-172 608.2 357 81.5
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.2e-171 606.7 365 81.6
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 3.4e-171 605.1 360 81.1
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.4e-171 605.1 358 81.6
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 5.7e-171 604.4 362 81.2
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 5.7e-171 604.4 349 82.8
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 5.7e-171 604.4 371 79.0
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 7.5e-171 604.0 365 81.1
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 7.5e-171 604.0 359 80.2
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.5e-171 604.0 365 79.5
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.2e-170 602.4 349 83.1
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 2.2e-170 602.4 364 79.7
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 2.8e-170 602.1 361 79.8
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 3.7e-170 601.7 360 80.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 8.3e-170 600.5 361 79.8
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.1e-169 600.1 361 79.5
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 1.1e-169 600.1 356 81.5
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 1.8e-169 599.4 359 80.8
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.4e-169 599.0 361 79.5
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 4.1e-169 598.2 388 76.0
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 5.4e-169 597.8 362 79.6
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 7.0e-169 597.4 361 80.3
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 7.0e-169 597.4 354 80.8
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 7.0e-169 597.4 351 81.2
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 9.1e-169 597.0 357 82.1
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.2e-168 596.7 353 80.2
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.7e-168 595.5 367 79.0
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.5e-168 595.1 345 82.3
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 4.5e-168 594.7 360 79.4
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.0e-167 593.6 352 81.0
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.8e-167 591.7 360 79.7
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 6.5e-167 590.9 355 79.4
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 8.5e-167 590.5 364 79.4
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 8.5e-167 590.5 363 78.5
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 8.5e-167 590.5 367 78.5
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 8.5e-167 590.5 360 78.9
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.1e-166 590.1 378 75.9
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.5e-166 589.7 350 81.1
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.5e-166 589.0 357 79.6
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 3.2e-166 588.6 360 80.3
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 3.2e-166 588.6 350 80.3
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 4.2e-166 588.2 361 78.1
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.2e-166 588.2 365 77.0
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.5e-166 587.8 365 76.7
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.5e-166 587.8 365 76.7
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 7.2e-166 587.4 359 78.8
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-165 586.6 351 80.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.2e-165 586.6 364 77.2
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.2e-165 586.6 349 80.5
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 2.7e-165 585.5 360 76.4
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.7e-165 585.5 353 80.2
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 2.7e-165 585.5 362 78.7
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.7e-165 585.5 354 80.8
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 3.6e-165 585.1 353 81.0
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 4.7e-165 584.7 356 80.6
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 4.7e-165 584.7 356 80.6
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.0e-164 583.6 352 80.1
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.8e-164 582.8 356 80.1
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 3.4e-163 578.6 353 79.0
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 4.4e-163 578.2 364 76.1
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 9.8e-163 577.0 356 79.5
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 2.2e-162 575.9 353 78.8
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 3.7e-162 575.1 356 79.5
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 4.9e-162 574.7 354 77.7
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 8.3e-162 573.9 357 76.8
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 4.1e-161 571.6 365 73.7
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.2e-160 570.1 355 76.3
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.6e-157 559.7 418 68.4
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 4.4e-155 551.6 352 74.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 9.8e-155 550.4 325 81.5
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 4.9e-154 548.1 368 71.5
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 4.9e-154 548.1 438 65.1
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 3.0e-151 538.9 453 60.5
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.9e-150 536.2 348 73.6
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 8.0e-149 530.8 377 68.2
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.5e-147 526.6 360 70.3
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.4e-147 525.4 357 68.6
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 3.4e-147 525.4 359 69.4
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.7e-146 523.1 356 69.7
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 4.1e-145 518.5 360 67.8
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 7.0e-145 517.7 359 68.2
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.2e-144 516.9 276 89.1
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 3.5e-144 515.4 387 68.7
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 5.0e-143 511.5 361 66.5
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.2e-141 506.9 355 66.5
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.5e-139 500.0 362 64.1
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 4.9e-138 495.0 350 65.7
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 6.4e-138 494.6 357 64.4
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 5.6e-134 481.5 519 50.7
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 6.2e-133 478.0 257 87.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 3.1e-124 449.1 344 68.3
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 4.4e-123 445.3 335 61.5
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 4.4e-123 445.3 269 78.8
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.9e-113 413.3 273 73.6
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.5e-107 392.1 344 57.0
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.4e-105 387.1 345 56.2
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.7e-98 363.6 255 67.1
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 6.5e-98 361.7 373 49.9
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 4.1e-84 315.8 193 78.8
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 9.1e-84 314.7 271 61.3
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 9.4e-81 304.7 162 87.7
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 4.6e-80 302.4 223 65.0
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 4.6e-80 302.4 164 86.6
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.7e-79 298.5 180 79.4
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-76 291.2 179 76.0
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 9.7e-70 268.1 177 74.0
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.0e-68 261.9 344 44.5
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 3.1e-52 209.9 118 85.6
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 2.7e-51 206.8 174 58.6
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 5.9e-51 205.7 170 62.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.2e-45 187.2 106 79.2
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 8.6e-42 175.3 90 91.1
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.9e-37 159.5 107 73.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.3e-26 124.0 177 44.6
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 3.6e-24 116.7 88 67.0
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.4e-20 104.8 112 53.6
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.2e-19 101.7 62 72.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.7e-18 97.8 55 78.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.7e-18 97.8 77 61.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.9e-17 94.4 225 29.3
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 3.1e-15 87.0 48 83.3
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 4.0e-15 86.7 78 57.7
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 4.4e-14 83.2 52 75.0
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 6.0e-11 72.8 76 48.7
Gorai.004G196400 Gossypium raimondii HOM05D001438 ORTHO05D001336 6.9e-07 59.3 218 22.9
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 2.6e-06 57.4 43 58.1
QL11p038890 Quercus lobata HOM05D000018 ORTHO05D001172 3.4e-06 57.0 357 22.1
Gorai.004G196100 Gossypium raimondii HOM05D001438 ORTHO05D001336 4.4e-06 56.6 213 23.9
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 5.8e-06 56.2 108 38.9
QL11p040202 Quercus lobata HOM05D000018 ORTHO05D001172 9.9e-06 55.5 357 22.4


User provided reference genes

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