Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.8e-138 494.6 267 100.0
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.1e-137 490.3 267 98.1
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-134 482.3 267 90.6
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 4.4e-131 471.5 267 95.1
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 6.1e-125 451.1 267 83.9
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.8e-124 447.6 269 82.9
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 2.6e-123 445.7 269 82.5
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.6e-123 445.7 269 82.5
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 4.4e-123 444.9 269 88.8
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-122 442.2 269 81.8
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.9e-122 441.4 275 81.5
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.9e-122 441.4 275 81.1
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 6.3e-122 441.0 269 80.7
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 81.4
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-121 439.1 275 80.7
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 2.3e-119 432.6 269 78.8
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 3.8e-119 431.8 269 78.4
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 6.6e-119 431.0 269 78.8
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.3e-118 428.7 269 77.7
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 7.2e-118 427.6 269 78.1
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 3.6e-117 425.2 269 77.3
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 6.1e-117 424.5 268 77.2
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 6.1e-117 424.5 268 76.9
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 8.0e-117 424.1 269 77.3
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.4e-116 423.3 269 78.1
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 4.0e-116 421.8 269 76.6
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 5.2e-116 421.4 269 77.0
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 6.8e-116 421.0 269 77.0
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 8.9e-116 420.6 269 77.0
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 8.9e-116 420.6 269 75.5
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 2.0e-115 419.5 271 76.0
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 2.0e-115 419.5 269 84.0
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 2.6e-115 419.1 263 77.6
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 3.4e-115 418.7 269 76.2
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 4.4e-115 418.3 269 83.6
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 5.7e-115 417.9 269 75.1
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 5.7e-115 417.9 269 76.2
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 5.7e-115 417.9 269 76.2
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 7.5e-115 417.5 269 75.5
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 7.5e-115 417.5 269 74.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 9.8e-115 417.2 271 76.0
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 1.3e-114 416.8 269 81.0
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.7e-114 416.4 269 76.2
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-114 416.0 269 75.1
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 2.9e-114 415.6 269 75.1
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 3.7e-114 415.2 269 76.6
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.9e-114 414.8 271 74.9
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 6.3e-114 414.5 269 74.7
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 8.3e-114 414.1 269 74.7
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 8.3e-114 414.1 269 83.3
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.1e-113 413.7 269 76.2
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.4e-113 413.3 267 75.3
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.8e-113 412.9 270 76.3
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.8e-113 412.9 269 74.7
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 2.4e-113 412.5 269 74.3
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 3.2e-113 412.1 270 75.6
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 3.2e-113 412.1 269 75.8
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 4.1e-113 411.8 269 80.7
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 5.4e-113 411.4 269 74.0
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.6e-112 409.8 269 75.8
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 2.0e-112 409.5 269 72.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 3.5e-112 408.7 306 69.3
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 4.6e-112 408.3 274 74.1
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 4.6e-112 408.3 269 76.2
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 5.9e-112 407.9 269 74.0
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 5.9e-112 407.9 270 73.7
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.0e-111 407.1 269 73.6
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.3e-111 406.8 269 73.2
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.3e-111 406.8 269 79.9
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.3e-111 406.8 269 73.6
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 2.3e-111 406.0 266 72.9
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.3e-110 402.1 269 76.6
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 5.6e-110 401.4 269 72.9
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.2e-109 400.2 269 71.7
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 2.1e-109 399.4 269 79.9
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 2.1e-109 399.4 265 80.0
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 8.0e-109 397.5 269 71.4
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 8.0e-109 397.5 269 72.5
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.0e-108 397.1 269 72.5
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.8e-108 396.4 281 69.0
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 3.1e-108 395.6 269 72.9
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 8.9e-108 394.0 268 71.6
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.2e-107 393.7 269 71.7
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.2e-107 393.7 269 71.4
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 3.4e-107 392.1 269 71.4
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.4e-107 392.1 269 71.7
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 4.4e-107 391.7 269 71.7
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 9.8e-107 390.6 269 71.7
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 9.8e-107 390.6 271 71.2
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 2.9e-106 389.0 269 70.6
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 4.9e-106 388.3 267 70.0
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 6.4e-106 387.9 270 71.5
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.1e-105 387.1 270 71.1
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 3.2e-105 385.6 270 71.1
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.2e-105 385.6 270 73.0
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 5.4e-105 384.8 267 71.2
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 7.0e-105 384.4 269 69.9
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.2e-105 384.0 270 72.6
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 1.2e-104 383.6 270 70.7
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 3.5e-104 382.1 269 69.1
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 3.5e-104 382.1 260 71.5
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 3.5e-104 382.1 269 68.8
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 1.7e-103 379.8 269 67.7
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-103 379.4 276 69.6
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.0e-103 379.0 271 69.7
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 6.6e-103 377.9 269 66.9
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 6.6e-103 377.9 268 69.0
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 8.6e-103 377.5 286 67.5
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.5e-102 376.7 271 69.4
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.9e-102 376.3 269 68.0
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 2.5e-102 375.9 269 66.9
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-102 375.9 276 69.2
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.6e-102 374.8 271 69.0
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 1.6e-101 373.2 252 74.2
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.1e-101 372.9 273 69.2
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-101 372.9 276 68.8
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 3.6e-101 372.1 271 74.5
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 8.1e-101 370.9 264 66.3
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 4.0e-100 368.6 269 65.8
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 5.2e-100 368.2 269 71.0
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.5e-99 366.7 269 66.2
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.0e-99 366.3 267 67.4
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 2.6e-99 365.9 244 73.8
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 9.8e-99 364.0 269 68.0
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 4.9e-98 361.7 236 81.8
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.1e-97 360.5 270 67.0
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 1.9e-97 359.8 269 65.1
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.4e-97 359.4 269 66.2
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.2e-97 359.0 269 64.3
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 4.1e-97 358.6 270 67.0
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 5.4e-97 358.2 271 70.5
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 7.1e-97 357.8 268 63.4
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 2.7e-96 355.9 268 63.4
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 5.6e-94 348.2 269 66.9
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 2.1e-93 346.3 235 71.9
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 3.1e-92 342.4 270 63.3
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.2e-92 341.7 271 63.1
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 8.9e-92 340.9 270 60.7
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 7.6e-91 337.8 267 62.2
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 9.9e-91 337.4 269 62.5
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.7e-90 336.7 269 62.5
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 6.4e-90 334.7 267 60.7
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 3.2e-89 332.4 270 61.5
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.2e-89 330.9 189 87.8
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.6e-88 328.6 272 64.0
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.1e-86 323.9 225 73.3
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.7e-80 302.8 249 58.6
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 3.3e-78 295.8 211 69.7
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 3.6e-77 292.4 297 52.5
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.8e-77 292.0 197 73.1
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.3e-74 283.9 217 68.2
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.9e-73 280.0 141 97.2
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 7.1e-73 278.1 187 71.7
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.5e-67 258.8 269 49.1
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-54 217.6 133 82.7
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.2e-48 197.6 189 54.5
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.3e-47 194.1 161 65.2
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.5e-46 189.9 269 39.0
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-44 183.7 169 63.3
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.7e-42 177.2 269 42.0
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 8.5e-42 174.9 88 97.7
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 8.5e-42 174.9 268 38.4
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.2e-40 171.0 105 77.1
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 3.4e-35 152.9 82 89.0
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 7.9e-32 141.7 73 90.4
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 6.7e-31 138.7 278 32.4
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-30 137.9 127 55.9
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 5.7e-30 135.6 107 63.6
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 8.8e-23 111.7 106 55.7
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.3e-21 107.8 67 74.6
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.2e-19 101.3 64 73.4
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 7.0e-12 75.5 65 56.9
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 1.5e-09 67.8 67 47.8
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.9e-09 67.4 57 57.9
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 3.2e-09 66.6 57 56.1
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 4.0e-07 59.7 51 56.9
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.4e-06 56.6 68 44.1


User provided reference genes

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