Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0289 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.7e-44 182.2 85 100.0
FvH4_7g16530 Fragaria vesca HOM05D005676 ORTHO05D007375 6.5e-12 73.9 36 91.7
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.5e-11 72.0 36 88.9
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 3.2e-11 71.6 36 88.9
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.2e-11 71.6 36 88.9
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.2e-11 71.6 36 88.9
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.2e-11 71.6 36 88.9
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.2e-11 71.6 36 88.9
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 3.2e-11 71.6 36 88.9
SGA_v2.0_scaffold5G03020 Striga asiatica HOM05D005676 ORTHO05D007375 5.5e-11 70.9 80 48.8
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 9.4e-11 70.1 36 86.1
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 1.2e-10 69.7 49 67.3
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 1.2e-10 69.7 36 86.1
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 1.2e-10 69.7 36 86.1
Gohir.D11G101550 Gossypium hirsutum HOM05D005676 ORTHO05D007375 1.2e-10 69.7 36 86.1
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 1.2e-10 69.7 36 86.1
Potri.014G099100 Populus trichocarpa HOM05D005676 ORTHO05D007375 1.2e-10 69.7 36 86.1
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 1.6e-10 69.3 36 86.1
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 1.6e-10 69.3 36 86.1
COL.COLO4_06282 Corchorus olitorius HOM05D005676 ORTHO05D007375 2.1e-10 68.9 75 50.7
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 2.7e-10 68.6 36 86.1
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 2.7e-10 68.6 36 83.3
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 2.7e-10 68.6 36 86.1
Sabra14G0072700 Salix brachista HOM05D005676 ORTHO05D007375 2.7e-10 68.6 36 83.3
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 2.7e-10 68.6 36 83.3
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 2.7e-10 68.6 36 83.3
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 2.7e-10 68.6 36 83.3
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 2.7e-10 68.6 36 83.3
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 83.3
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 83.3
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 83.3
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 83.3
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 83.3
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 83.3
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 80.6
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 80.6
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 80.6
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 3.6e-10 68.2 36 83.3
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 4.6e-10 67.8 36 80.6
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 4.6e-10 67.8 36 80.6
Ciclev10023383m.g Citrus clementina HOM05D005676 ORTHO05D007375 4.6e-10 67.8 34 88.2
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 4.6e-10 67.8 36 80.6
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 4.6e-10 67.8 36 83.3
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
BcaC08g45164 Brassica carinata HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 80.6
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 77.8
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 6.1e-10 67.4 36 83.3
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 7.9e-10 67.0 36 80.6
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 7.9e-10 67.0 36 80.6
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 7.9e-10 67.0 36 83.3
CARHR172110 Cardamine hirsuta HOM05D005676 ORTHO05D007375 1.0e-09 66.6 36 83.3
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 1.0e-09 66.6 36 80.6
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 1.0e-09 66.6 36 80.6
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 1.4e-09 66.2 36 80.6
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 1.4e-09 66.2 36 77.8
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.4e-09 66.2 36 80.6
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 1.4e-09 66.2 36 80.6
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 1.4e-09 66.2 36 77.8
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 1.8e-09 65.9 36 83.3
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 1.8e-09 65.9 36 80.6
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 1.8e-09 65.9 36 80.6
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 1.8e-09 65.9 36 83.3
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 2.3e-09 65.5 36 80.6
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 2.3e-09 65.5 36 80.6
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 2.3e-09 65.5 36 77.8
Cpa.g.sc96.24 Carica papaya HOM05D005676 ORTHO05D007375 3.0e-09 65.1 36 80.6
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 3.0e-09 65.1 36 77.8
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 3.0e-09 65.1 36 80.6
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 5.1e-09 64.3 36 75.0
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 5.1e-09 64.3 36 77.8
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 5.1e-09 64.3 36 77.8
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 6.7e-09 63.9 36 77.8
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 6.7e-09 63.9 36 75.0
Actinidia20244 Actinidia chinensis HOM05D005676 ORTHO05D007375 8.8e-09 63.5 34 85.3
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 8.8e-09 63.5 40 70.0
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 8.8e-09 63.5 36 77.8
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 8.8e-09 63.5 36 75.0
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 1.1e-08 63.2 41 65.9
ATR0602G016 Amborella trichopoda HOM05D005676 ORTHO05D007375 2.5e-08 62.0 33 81.8
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 2.5e-08 62.0 36 75.0
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 3.3e-08 61.6 36 77.8
Glyma.07G055432 Glycine max HOM05D005676 ORTHO05D007375 4.3e-08 61.2 34 79.4
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 4.3e-08 61.2 36 75.0
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 5.7e-08 60.8 36 69.4
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 2.8e-07 58.5 36 69.4
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 4.8e-07 57.8 36 69.4
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 6.3e-07 57.4 36 66.7
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 1.1e-06 56.6 37 70.3
AL5G43810 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 5.3e-06 54.3 32 75.0


User provided reference genes

Program Settings