Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-73 279.6 147 100.0
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.4e-46 189.9 100 100.0
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 2.8e-31 139.0 68 98.5
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 7.0e-22 107.8 64 82.8
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 2.1e-18 96.3 57 86.0
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 5.7e-16 88.2 79 62.0
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.7e-16 88.2 79 62.0
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.7e-16 88.2 79 62.0
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.5e-16 87.8 75 64.0
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 7.5e-16 87.8 131 45.8
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.7e-15 86.7 65 72.3
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.7e-15 85.5 133 42.1
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 8.3e-15 84.3 65 70.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 3.1e-14 82.4 127 42.5
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 7.0e-14 81.3 65 64.6
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 9.2e-14 80.9 117 44.4
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 5.9e-13 78.2 73 57.5
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 5.9e-13 78.2 73 57.5
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 5.9e-13 78.2 73 57.5
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 5.9e-13 78.2 73 57.5
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 5.9e-13 78.2 73 57.5
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 5.9e-13 78.2 65 60.0
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 1.0e-12 77.4 73 57.5
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.3e-12 77.0 73 56.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 1.3e-12 77.0 65 60.0
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 1.3e-12 77.0 65 60.0
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.3e-12 77.0 65 58.5
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.3e-12 77.0 65 58.5
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 2.3e-12 76.3 65 58.5
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 2.3e-12 76.3 117 41.9
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.9e-12 75.9 65 58.5
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 2.9e-12 75.9 65 58.5
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 3.8e-12 75.5 117 41.9
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 3.8e-12 75.5 117 41.9
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 3.8e-12 75.5 117 41.9
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 3.8e-12 75.5 73 56.2
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 5.0e-12 75.1 73 54.8
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 5.0e-12 75.1 73 54.8
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 5.0e-12 75.1 73 54.8
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 5.0e-12 75.1 65 58.5
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 5.0e-12 75.1 119 40.3
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 5.0e-12 75.1 65 56.9
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 5.0e-12 75.1 117 41.0
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 6.6e-12 74.7 73 56.2
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 6.6e-12 74.7 73 56.2
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 6.6e-12 74.7 73 56.2
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 6.6e-12 74.7 73 56.2
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 8.6e-12 74.3 118 39.8
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 8.6e-12 74.3 73 54.8
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 8.6e-12 74.3 73 54.8
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 8.6e-12 74.3 65 58.5
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.1e-11 73.9 125 40.8
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-11 73.6 117 40.2
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.5e-11 73.6 127 38.6
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.5e-11 73.6 65 56.9
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 2.5e-11 72.8 73 54.8
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.5e-11 72.8 65 56.9
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 2.5e-11 72.8 65 56.9
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 3.3e-11 72.4 118 38.1
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 4.3e-11 72.0 73 53.4
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 4.3e-11 72.0 65 56.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 5.6e-11 71.6 73 54.8
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 5.6e-11 71.6 65 55.4
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 5.6e-11 71.6 117 40.2
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 7.3e-11 71.2 65 55.4
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 7.3e-11 71.2 124 37.9
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 7.3e-11 71.2 73 53.4
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 9.5e-11 70.9 127 36.2
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 9.5e-11 70.9 127 36.2
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 9.5e-11 70.9 65 56.9
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.2e-10 70.5 117 39.3
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 2.1e-10 69.7 73 52.1
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 2.1e-10 69.7 125 38.4
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 2.8e-10 69.3 80 48.8
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 2.8e-10 69.3 73 52.1
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.8e-10 69.3 65 53.8
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 2.8e-10 69.3 74 51.4
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 3.6e-10 68.9 80 47.5
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 3.6e-10 68.9 65 53.8
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 3.6e-10 68.9 65 53.8
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.7e-10 68.6 73 52.1
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 4.7e-10 68.6 60 56.7
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.7e-10 68.6 128 37.5
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.0e-09 67.4 65 53.8
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 2.3e-09 66.2 55 61.8
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 3.1e-09 65.9 65 50.8
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 4.0e-09 65.5 61 54.1
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 4.0e-09 65.5 65 52.3
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 5.2e-09 65.1 73 47.9
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 5.2e-09 65.1 65 50.8
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 6.8e-09 64.7 65 50.8
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.5e-08 63.5 65 49.2
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 2.0e-08 63.2 65 49.2
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.0e-08 63.2 65 47.7
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 2.0e-08 63.2 73 49.3
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 2.0e-08 63.2 65 50.8
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.6e-08 62.8 65 49.2
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 3.4e-08 62.4 64 53.1
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 3.4e-08 62.4 64 53.1
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.4e-08 62.4 65 47.7
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 3.4e-08 62.4 65 49.2
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 3.4e-08 62.4 65 52.3
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 3.4e-08 62.4 65 52.3
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 4.4e-08 62.0 65 49.2
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 5.8e-08 61.6 65 47.7
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 9.8e-08 60.8 65 46.2
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.7e-07 60.1 63 52.4
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.7e-07 60.1 63 52.4
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.7e-07 60.1 63 52.4
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 1.7e-07 60.1 63 52.4
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.2e-07 59.7 63 52.4
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 2.9e-07 59.3 65 47.7
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.9e-07 59.3 119 33.6
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 3.7e-07 58.9 65 49.2
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 3.7e-07 58.9 57 50.9
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 4.9e-07 58.5 65 46.2
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.1e-06 57.4 63 47.6
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.4e-06 57.0 63 47.6
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.4e-06 57.0 63 49.2
FAN08G0213 Fragaria x ananassa HOM05D042832 ORTHO05D022695 1.9e-06 56.6 29 93.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 2.4e-06 56.2 65 46.2
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 2.4e-06 56.2 119 32.8
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.4e-06 56.2 65 47.7
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.1e-06 55.5 65 47.7
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.4e-06 55.1 71 45.1
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 7.0e-06 54.7 116 29.3
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 9.2e-06 54.3 55 52.7
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 9.2e-06 54.3 123 31.7
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.2e-06 54.3 65 46.2


User provided reference genes

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