Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0143 Fragaria x ananassa HOM05D024938 ORTHO05D019207 2.5e-110 402.1 203 100.0
FAN10G3692 Fragaria x ananassa HOM05D005822 ORTHO05D025397 1.3e-58 230.3 115 100.0
FAN06G2712 Fragaria x ananassa HOM05D024938 ORTHO05D019207 7.6e-51 204.5 203 57.6
FAN10G4289 Fragaria x ananassa HOM05D024938 ORTHO05D019207 1.3e-29 134.0 70 92.9
FAN06G4120 Fragaria x ananassa HOM05D000009 ORTHO05D000008 6.1e-16 88.6 49 85.7
FvH4_7g27354 Fragaria vesca HOM05D005822 ORTHO05D007267 3.0e-15 86.3 46 93.5
FvH4_7g28390 Fragaria vesca HOM05D000009 ORTHO05D000008 4.5e-11 72.4 41 87.8
RcHm_v2.0_Chr1g0374161 Rosa chinensis HOM05D000229 ORTHO05D000182 5.9e-11 72.0 40 90.0
RcHm_v2.0_Chr1g0374851 Rosa chinensis HOM05D000229 ORTHO05D000182 1.7e-10 70.5 40 85.0
FAN10G0003 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.9e-10 69.7 67 59.7
FAN06G0654 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.4e-09 67.4 31 96.8
FvH4_7g27320 Fragaria vesca HOM05D000229 ORTHO05D000182 1.9e-09 67.0 40 82.5
FAN03G1108 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.9e-09 67.0 40 82.5
FAN03G1512 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.9e-09 67.0 40 82.5
FAN06G2303 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.9e-09 67.0 40 82.5
FAN10G2574 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.9e-09 67.0 40 82.5
FAN10G2752 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.9e-09 67.0 40 82.5
Atru.chr1.759 Acer truncatum HOM05D000229 ORTHO05D000182 7.2e-09 65.1 40 77.5
Aa31LG11G1210 Aethionema arabicum HOM05D000229 ORTHO05D000182 7.2e-09 65.1 40 75.0
AUR62002210 Chenopodium quinoa HOM05D000229 ORTHO05D000182 1.2e-08 64.3 40 77.5
Prupe.2G276300 Prunus persica HOM05D000229 ORTHO05D000182 1.2e-08 64.3 40 80.0
Ciclev10005463m.g Citrus clementina HOM05D000229 ORTHO05D000182 2.1e-08 63.5 40 75.0
MD07G1252700 Malus domestica HOM05D000229 ORTHO05D000182 2.1e-08 63.5 40 77.5
CiPaw.04G059300 Carya illinoinensis HOM05D000229 ORTHO05D000182 2.7e-08 63.2 40 80.0
AUR62015489 Chenopodium quinoa HOM05D000229 ORTHO05D000182 2.7e-08 63.2 40 75.0
vmacro06813 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 2.7e-08 63.2 65 56.9
Ah.07g207730 Amaranthus hybridus HOM05D000229 ORTHO05D000182 7.9e-08 61.6 63 55.6
Oeu022473.1 Olea europaea HOM05D000229 ORTHO05D000182 7.9e-08 61.6 40 77.5
GSVIVG01014048001 Vitis vinifera HOM05D000229 ORTHO05D000182 1.0e-07 61.2 40 70.0
BcaC03g18147 Brassica carinata HOM05D000229 ORTHO05D000182 1.4e-07 60.8 40 72.5
BolC2t12274H Brassica oleracea HOM05D000229 ORTHO05D000182 1.4e-07 60.8 40 72.5
EL10Ac3g05851 Beta vulgaris HOM05D000229 ORTHO05D000182 1.8e-07 60.5 40 72.5
Dinv06567 Davidia involucrata HOM05D000229 ORTHO05D000182 1.8e-07 60.5 40 75.0
Potri.001G125400 Populus trichocarpa HOM05D000229 ORTHO05D000182 1.8e-07 60.5 40 75.0
RcHm_v2.0_Chr1g0374211 Rosa chinensis HOM05D005822 ORTHO05D007267 1.8e-07 60.5 119 46.2
FAN03G1300 Fragaria x ananassa HOM05D005822 ORTHO05D007267 2.3e-07 60.1 119 45.4
FAN06G5026 Fragaria x ananassa HOM05D005822 ORTHO05D007267 2.3e-07 60.1 119 45.4
VMungo1127G2160 Vigna mungo HOM05D000229 ORTHO05D000182 2.3e-07 60.1 69 52.2
CSS0045689 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 3.0e-07 59.7 40 72.5
Phvul.011G007600 Phaseolus vulgaris HOM05D000229 ORTHO05D000182 3.0e-07 59.7 40 72.5
HPP92_012738 Vanilla planifolia HOM05D005822 ORTHO05D007267 3.0e-07 59.7 132 39.4
BcaB02g09644 Brassica carinata HOM05D000229 ORTHO05D000182 3.9e-07 59.3 40 72.5
A02p42290 Brassica napus HOM05D000229 ORTHO05D000182 3.9e-07 59.3 40 72.5
BraA02t09158Z Brassica rapa HOM05D000229 ORTHO05D000182 3.9e-07 59.3 40 72.5
FvH4_7g27641 Fragaria vesca HOM05D005822 ORTHO05D007267 3.9e-07 59.3 88 53.4
Hma1.2p1_0432F.1_g151840 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 3.9e-07 59.3 40 72.5
Sc19g0002060 Simmondsia chinensis HOM05D000229 ORTHO05D000182 3.9e-07 59.3 40 70.0
SGA_v2.0_scaffold44G16550 Striga asiatica HOM05D005822 ORTHO05D007267 3.9e-07 59.3 82 57.3
TAR375G0843 Trochodendron aralioides HOM05D000229 ORTHO05D000182 3.9e-07 59.3 43 65.1
Thhalv10004621m.g Eutrema salsugineum HOM05D000229 ORTHO05D000182 5.1e-07 58.9 40 72.5
Peaxi162Scf00241g00024 Petunia axillaris HOM05D000229 ORTHO05D000182 5.1e-07 58.9 40 70.0
Sabra01G0096500 Salix brachista HOM05D000229 ORTHO05D000182 5.1e-07 58.9 40 70.0
Cpa.g.sc3.330 Carica papaya HOM05D005822 ORTHO05D007267 6.7e-07 58.5 88 52.3
COL.COLO4_14106 Corchorus olitorius HOM05D000229 ORTHO05D000182 6.7e-07 58.5 40 67.5
SalBow6G5779 Salvia bowleyana HOM05D000229 ORTHO05D000182 6.7e-07 58.5 40 65.0
BcaB07g29833 Brassica carinata HOM05D000229 ORTHO05D000182 8.8e-07 58.2 40 70.0
Carub.0008s2310 Capsella rubella HOM05D000229 ORTHO05D000182 8.8e-07 58.2 40 70.0
CARHR276210 Cardamine hirsuta HOM05D000229 ORTHO05D000182 8.8e-07 58.2 40 72.5
Dinv16842 Davidia involucrata HOM05D000229 ORTHO05D000182 8.8e-07 58.2 40 72.5
FAN06G4841 Fragaria x ananassa HOM05D005822 ORTHO05D007267 8.8e-07 58.2 118 44.9
Glyma.09G229500 Glycine max HOM05D000229 ORTHO05D000182 8.8e-07 58.2 40 70.0
Rhsim03G0166200 Rhododendron simsii HOM05D000229 ORTHO05D000182 8.8e-07 58.2 64 56.2
SEGI_02825 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 8.8e-07 58.2 41 68.3
BcaC01g02467 Brassica carinata HOM05D000229 ORTHO05D000182 1.1e-06 57.8 40 70.0
A06p29120 Brassica napus HOM05D000229 ORTHO05D000182 1.1e-06 57.8 40 70.0
C02p62150 Brassica napus HOM05D000229 ORTHO05D000182 1.1e-06 57.8 48 60.4
C03p64470 Brassica napus HOM05D000229 ORTHO05D000182 1.1e-06 57.8 40 70.0
BolC3t18702H Brassica oleracea HOM05D000229 ORTHO05D000182 1.1e-06 57.8 40 70.0
BraA06t25860Z Brassica rapa HOM05D000229 ORTHO05D000182 1.1e-06 57.8 40 70.0
CiPaw.03G092500 Carya illinoinensis HOM05D000229 ORTHO05D000182 1.1e-06 57.8 40 72.5
Eucgr.A02898 Eucalyptus grandis HOM05D000229 ORTHO05D000182 1.1e-06 57.8 40 65.0
Nitab4.5_0002816g0040 Nicotiana tabacum HOM05D005822 ORTHO05D007267 1.1e-06 57.8 95 49.5
SEGI_06432 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 1.1e-06 57.8 41 65.9
TAR629G1836 Trochodendron aralioides HOM05D005822 ORTHO05D007267 1.1e-06 57.8 88 51.1
unitig_52.g17763 Utricularia gibba HOM05D005822 ORTHO05D007267 1.1e-06 57.8 98 49.0
AL8G39300 Arabidopsis lyrata HOM05D000229 ORTHO05D000182 1.5e-06 57.4 40 67.5
AT5G62420 Arabidopsis thaliana HOM05D000229 ORTHO05D000182 1.5e-06 57.4 40 67.5
arahy.Tifrunner.gnm1.ann1.6W49KF Arachis hypogaea HOM05D000229 ORTHO05D000182 1.5e-06 57.4 69 46.4
MSTRG.8827 Avicennia marina HOM05D005822 ORTHO05D007267 1.5e-06 57.4 88 52.3
CANSAT56G2434 Cannabis sativa HOM05D000229 ORTHO05D000182 1.5e-06 57.4 40 70.0
Nitab4.5_0003490g0080 Nicotiana tabacum HOM05D005822 ORTHO05D007267 1.5e-06 57.4 88 52.3
QL09p005415 Quercus lobata HOM05D000229 ORTHO05D000182 1.5e-06 57.4 40 67.5
Solyc03g093270.3 Solanum lycopersicum HOM05D000229 ORTHO05D000182 1.5e-06 57.4 40 70.0
Sopen03g024060 Solanum pennellii HOM05D000229 ORTHO05D000182 1.5e-06 57.4 40 70.0
PGSC0003DMG400014822 Solanum tuberosum HOM05D000229 ORTHO05D000182 1.5e-06 57.4 40 70.0
GSVIVG01018681001 Vitis vinifera HOM05D005822 ORTHO05D007267 1.5e-06 57.4 88 51.1
CANSAT56G1500 Cannabis sativa HOM05D005822 ORTHO05D007267 2.0e-06 57.0 99 44.4
FAN01G1358 Fragaria x ananassa HOM05D000229 ORTHO05D000182 2.0e-06 57.0 37 78.4
FAN06G3514 Fragaria x ananassa HOM05D000229 ORTHO05D000182 2.0e-06 57.0 52 61.5
MBI12_g29751_MAGBIO Magnolia biondii HOM05D005822 ORTHO05D007267 2.0e-06 57.0 88 51.1
MD07G1252900 Malus domestica HOM05D005822 ORTHO05D007267 2.0e-06 57.0 88 52.3
SalBow6G6874 Salvia bowleyana HOM05D000229 ORTHO05D000182 2.0e-06 57.0 39 71.8
Sp2g25600 Schrenkiella parvula HOM05D000229 ORTHO05D000182 2.0e-06 57.0 40 70.0
Solyc03g093240.4 Solanum lycopersicum HOM05D005822 ORTHO05D007267 2.0e-06 57.0 88 52.3
Sopen03g024070 Solanum pennellii HOM05D000229 ORTHO05D000182 2.0e-06 57.0 40 70.0
PGSC0003DMG400041306 Solanum tuberosum HOM05D000229 ORTHO05D000182 2.0e-06 57.0 40 70.0
Actinidia13579 Actinidia chinensis HOM05D005822 ORTHO05D007267 2.6e-06 56.6 82 53.7
ATR0317G010 Amborella trichopoda HOM05D000229 ORTHO05D000182 2.6e-06 56.6 40 65.0
Aqoxy5G03861 Aquilegia oxysepala HOM05D005822 ORTHO05D007267 2.6e-06 56.6 98 46.9
CAN.G48.35 Capsicum annuum HOM05D000229 ORTHO05D000182 2.6e-06 56.6 40 70.0
CAN.G48.36 Capsicum annuum HOM05D000229 ORTHO05D000182 2.6e-06 56.6 40 70.0
Haze_13891 Corylus avellana HOM05D000229 ORTHO05D000182 2.6e-06 56.6 40 70.0
Nn1g00978 Nelumbo nucifera HOM05D000229 ORTHO05D000182 2.6e-06 56.6 40 70.0
Oeu022478.1 Olea europaea HOM05D005822 ORTHO05D007267 2.6e-06 56.6 88 50.0
Solyc03g093280.3 Solanum lycopersicum HOM05D000229 ORTHO05D000182 2.6e-06 56.6 40 67.5
Solyc03g093290.2 Solanum lycopersicum HOM05D000229 ORTHO05D000182 2.6e-06 56.6 40 67.5
Sopen03g024040 Solanum pennellii HOM05D005822 ORTHO05D007267 2.6e-06 56.6 88 52.3
DCAR_014621 Daucus carota HOM05D005822 ORTHO05D007267 3.3e-06 56.2 88 51.1
Dinv28582 Davidia involucrata HOM05D005822 ORTHO05D007267 3.3e-06 56.2 88 51.1
FvH4_7g27380 Fragaria vesca HOM05D005822 ORTHO05D007267 3.3e-06 56.2 99 48.5
Peaxi162Scf00241g00035 Petunia axillaris HOM05D005822 ORTHO05D007267 3.3e-06 56.2 88 51.1
Psat2g003880 Pisum sativum HOM05D000229 ORTHO05D000182 3.3e-06 56.2 48 64.6
Psat2g003920 Pisum sativum HOM05D000229 ORTHO05D000182 3.3e-06 56.2 48 64.6
Prupe.2G276500 Prunus persica HOM05D005822 ORTHO05D007267 3.3e-06 56.2 119 44.5
Cfa008156 Carpinus fangiana HOM05D005822 ORTHO05D007267 4.4e-06 55.8 98 44.9
Cc02_g04350 Coffea canephora HOM05D005822 ORTHO05D007267 4.4e-06 55.8 88 50.0
Haze_13887 Corylus avellana HOM05D005822 ORTHO05D007267 4.4e-06 55.8 98 44.9
Migut.F00481 Erythranthe guttata HOM05D005822 ORTHO05D007267 4.4e-06 55.8 88 50.0
FAN03G2858 Fragaria x ananassa HOM05D024938 ORTHO05D019207 4.4e-06 55.8 28 92.9
FAN03G3247 Fragaria x ananassa HOM05D024938 ORTHO05D019207 4.4e-06 55.8 28 92.9
Glyma.12G006800 Glycine max HOM05D000229 ORTHO05D000182 4.4e-06 55.8 40 70.0
Gohir.A12G198100 Gossypium hirsutum HOM05D005822 ORTHO05D007267 4.4e-06 55.8 88 50.0
Gohir.D12G200700 Gossypium hirsutum HOM05D005822 ORTHO05D007267 4.4e-06 55.8 88 50.0
Gorai.008G215800 Gossypium raimondii HOM05D005822 ORTHO05D007267 4.4e-06 55.8 88 50.0
Lj3g0005558 Lotus japonicus HOM05D000229 ORTHO05D000182 4.4e-06 55.8 40 67.5
Medtr4g036845 Medicago truncatula HOM05D000229 ORTHO05D000182 4.4e-06 55.8 40 67.5
SalBow8G0561 Salvia bowleyana HOM05D005822 ORTHO05D007267 4.4e-06 55.8 88 51.1
SEGI_00736 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 4.4e-06 55.8 40 65.0
TPR.G24406 Trifolium pratense HOM05D000229 ORTHO05D000182 4.4e-06 55.8 48 64.6
VMungo0647G1171 Vigna mungo HOM05D000229 ORTHO05D000182 4.4e-06 55.8 68 50.0
Actinidia13580 Actinidia chinensis HOM05D000229 ORTHO05D000182 5.7e-06 55.5 40 65.0
Actinidia24998 Actinidia chinensis HOM05D000229 ORTHO05D000182 5.7e-06 55.5 40 65.0
arahy.Tifrunner.gnm1.ann1.P7LS6G Arachis hypogaea HOM05D000229 ORTHO05D000182 5.7e-06 55.5 69 44.9
ClCG01G004960 Citrullus lanatus HOM05D005822 ORTHO05D007267 5.7e-06 55.5 89 51.7
Cc02_g04360 Coffea canephora HOM05D000229 ORTHO05D000182 5.7e-06 55.5 40 65.0
MELO3C005439.2 Cucumis melo HOM05D005822 ORTHO05D007267 5.7e-06 55.5 89 51.7
FAN10G0261 Fragaria x ananassa HOM05D000009 ORTHO05D007267 5.7e-06 55.5 30 86.7
Lalb_Chr01g0022431 Lupinus albus HOM05D000229 ORTHO05D000182 5.7e-06 55.5 40 67.5
Os02g0104700 Oryza sativa ssp. japonica HOM05D005822 ORTHO05D007267 5.7e-06 55.5 67 64.2
Sc19g0002050 Simmondsia chinensis HOM05D005822 ORTHO05D007267 5.7e-06 55.5 88 48.9
Aa31LG4G16250 Aethionema arabicum HOM05D005822 ORTHO05D007267 7.4e-06 55.1 98 45.9
ATR0317G089 Amborella trichopoda HOM05D005822 ORTHO05D007267 7.4e-06 55.1 88 50.0
CARHR156090 Cardamine hirsuta HOM05D005822 ORTHO05D007267 7.4e-06 55.1 98 46.9
ECA232G0361 Erigeron canadensis HOM05D005822 ORTHO05D007267 7.4e-06 55.1 98 44.9
Manes.02G134200 Manihot esculenta HOM05D005822 ORTHO05D007267 7.4e-06 55.1 88 50.0
Phvul.008G287300 Phaseolus vulgaris HOM05D000229 ORTHO05D000182 7.4e-06 55.1 48 60.4
vmacro06808 Vaccinium macrocarpon HOM05D005822 ORTHO05D007267 7.4e-06 55.1 97 46.4
VMungo0647G0610 Vigna mungo HOM05D000229 ORTHO05D000182 7.4e-06 55.1 48 60.4
CSS0023192 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 9.7e-06 54.7 41 68.3
Cfa008154 Carpinus fangiana HOM05D000229 ORTHO05D000182 9.7e-06 54.7 40 70.0
Ca_20288_v3 Cicer arietinum L. HOM05D000229 ORTHO05D000182 9.7e-06 54.7 98 39.8
Ca_25530_v3 Cicer arietinum L. HOM05D000229 ORTHO05D000182 9.7e-06 54.7 40 70.0
DCAR_020184 Daucus carota HOM05D000229 ORTHO05D000182 9.7e-06 54.7 40 65.0
Lsat_1_v5_gn_9_52001 Lactuca sativa HOM05D005822 ORTHO05D007267 9.7e-06 54.7 98 44.9
Manes.06G134000 Manihot esculenta HOM05D000229 ORTHO05D000182 9.7e-06 54.7 40 72.5
Nn1g00973 Nelumbo nucifera HOM05D005822 ORTHO05D007267 9.7e-06 54.7 68 58.8
Nn6g33940 Nelumbo nucifera HOM05D000229 ORTHO05D000182 9.7e-06 54.7 40 67.5
Psat7g159600 Pisum sativum HOM05D000229 ORTHO05D000182 9.7e-06 54.7 40 65.0
Potri.001G124900 Populus trichocarpa HOM05D005822 ORTHO05D007267 9.7e-06 54.7 82 52.4
Sed0004127 Sechium edule HOM05D005822 ORTHO05D007267 9.7e-06 54.7 120 41.7
Thecc.03G154900 Theobroma cacao HOM05D005822 ORTHO05D007267 9.7e-06 54.7 88 48.9


User provided reference genes

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