Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.1e-72 274.2 132 100.0
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.3e-51 206.5 113 83.2
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.1e-49 199.1 110 82.7
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 1.8e-45 186.0 108 79.6
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 3.4e-36 155.2 105 68.6
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.3e-35 153.3 105 67.6
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 1.7e-35 152.9 104 67.3
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 3.0e-32 142.1 110 60.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 8.7e-32 140.6 115 57.4
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 3.3e-31 138.7 106 63.2
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.3e-31 138.7 106 63.2
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 4.3e-31 138.3 103 65.0
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.4e-31 137.5 110 60.0
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.7e-30 136.3 110 59.1
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 6.3e-30 134.4 78 83.3
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 6.1e-25 117.9 104 51.0
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 6.1e-25 117.9 107 50.5
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 7.4e-23 110.9 100 48.0
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 9.7e-23 110.5 104 48.1
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.3e-22 110.2 113 51.3
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 2.2e-22 109.4 107 50.5
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 4.8e-22 108.2 100 46.0
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 3.1e-21 105.5 98 50.0
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 5.3e-21 104.8 102 46.1
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 3.4e-20 102.1 93 51.6
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.5e-20 101.7 119 43.7
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.0e-19 100.5 92 45.7
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.7e-19 99.8 92 45.7
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.7e-19 99.8 98 48.0
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 2.2e-19 99.4 96 46.9
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 3.8e-19 98.6 96 46.9
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.8e-19 98.6 46 93.5
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.0e-19 98.2 109 44.0
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 5.0e-19 98.2 96 52.1
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 1.4e-18 96.7 108 42.6
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.9e-18 96.3 96 46.9
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.9e-18 96.3 119 43.7
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.9e-18 96.3 119 43.7
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.2e-18 95.1 115 43.5
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 4.2e-18 95.1 115 43.5
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 5.5e-18 94.7 109 46.8
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 7.2e-18 94.4 103 43.7
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 9.4e-18 94.0 99 47.5
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 9.4e-18 94.0 99 47.5
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 9.4e-18 94.0 107 43.0
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.2e-17 93.6 93 47.3
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 4.7e-17 91.7 127 40.9
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 6.1e-17 91.3 99 44.4
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 1.0e-16 90.5 102 43.1
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 1.8e-16 89.7 97 42.3
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 5.2e-16 88.2 121 38.0
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.7e-16 87.8 94 47.9
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 6.7e-16 87.8 88 51.1
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 6.7e-16 87.8 98 43.9
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.1e-15 87.0 99 43.4
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 1.5e-15 86.7 96 43.8
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 2.0e-15 86.3 103 38.8
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.3e-15 85.5 92 43.5
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.3e-15 85.5 92 43.5
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 4.4e-15 85.1 91 44.0
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 7.4e-15 84.3 100 43.0
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 9.7e-15 84.0 109 41.3
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 9.7e-15 84.0 88 44.3
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.3e-14 83.6 97 47.4
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.3e-14 83.6 99 45.5
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 2.2e-14 82.8 96 41.7
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 2.2e-14 82.8 103 40.8
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 2.2e-14 82.8 108 40.7
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 2.2e-14 82.8 100 42.0
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.7e-14 82.0 94 45.7
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 4.8e-14 81.6 98 39.8
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.4e-13 80.1 93 46.2
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 1.4e-13 80.1 109 36.7
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 1.4e-13 80.1 108 38.0
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.8e-13 79.7 103 40.8
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 2.4e-13 79.3 91 36.3
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.4e-13 79.3 91 40.7
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.1e-13 79.0 88 40.9
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.1e-13 78.6 92 42.4
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 4.1e-13 78.6 105 39.0
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.3e-13 78.2 93 48.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.3e-13 78.2 93 43.0
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 5.3e-13 78.2 94 41.5
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 9.1e-13 77.4 104 38.5
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.1e-13 77.4 93 43.0
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.6e-12 76.6 92 39.1
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 1.6e-12 76.6 101 39.6
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 2.0e-12 76.3 104 38.5
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.0e-12 76.3 103 41.7
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 2.0e-12 76.3 98 38.8
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.0e-12 76.3 70 52.9
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 2.6e-12 75.9 114 36.8
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 2.6e-12 75.9 91 44.0
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.6e-12 75.9 86 41.9
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 3.5e-12 75.5 90 38.9
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 4.5e-12 75.1 105 36.2
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.5e-12 75.1 88 46.6
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 4.5e-12 75.1 101 38.6
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 5.9e-12 74.7 103 39.8
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.0e-11 73.9 92 42.4
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 1.0e-11 73.9 103 39.8
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 1.0e-11 73.9 93 38.7
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.3e-11 73.6 90 45.6
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 1.7e-11 73.2 91 42.9
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.7e-11 73.2 90 45.6
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 2.9e-11 72.4 97 38.1
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 2.9e-11 72.4 97 40.2
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 3.8e-11 72.0 117 36.8
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 8.5e-11 70.9 107 38.3
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.1e-10 70.5 88 43.2
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.5e-10 70.1 92 43.5
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 1.9e-10 69.7 103 37.9
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 2.5e-10 69.3 92 35.9
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.5e-10 68.2 91 37.4
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.5e-10 68.2 90 42.2
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 9.4e-10 67.4 58 48.3
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.7e-09 65.9 90 41.1
RcHm_v2.0_Chr1g0342381 Rosa chinensis HOM05D000462 ORTHO05D005846 3.6e-09 65.5 41 61.0
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 3.6e-09 65.5 87 35.6
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 6.1e-09 64.7 91 39.6
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 8.0e-09 64.3 80 42.5
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 2.3e-08 62.8 89 33.7
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.5e-07 60.1 87 35.6
RcHm_v2.0_Chr7g0179221 Rosa chinensis HOM05D000395 ORTHO05D000088 1.5e-07 60.1 112 28.6
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.0e-07 59.7 87 35.6
DCAR_003838 Daucus carota HOM05D000395 ORTHO05D000088 7.5e-07 57.8 88 35.2
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.7e-07 57.4 93 39.8
Cfa004943 Carpinus fangiana HOM05D001372 ORTHO05D002010 1.7e-06 56.6 103 30.1
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.7e-06 56.6 87 29.9
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 2.8e-06 55.8 62 45.2
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 3.7e-06 55.5 82 43.9
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 6.3e-06 54.7 52 50.0
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 6.3e-06 54.7 85 41.2
Cpa.g.sc10.140 Carica papaya HOM05D000395 ORTHO05D000088 8.2e-06 54.3 95 31.6
Ciclev10033261m.g Citrus clementina HOM05D000462 ORTHO05D005846 8.2e-06 54.3 38 55.3


User provided reference genes

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