Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 9.6e-164 580.1 293 100.0
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 1.3e-155 553.1 293 96.9
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 9.6e-148 526.9 293 92.5
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 1.2e-134 483.4 295 85.8
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 2.8e-94 349.4 275 68.7
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 1.8e-85 320.1 282 63.8
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 8.9e-69 264.6 268 57.1
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 4.4e-68 262.3 275 53.8
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 2.1e-65 253.4 281 53.7
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 3.5e-65 252.7 281 55.9
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 1.3e-64 250.8 280 55.0
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.9e-63 246.9 277 53.4
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 3.3e-63 246.1 278 54.3
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.6e-62 243.8 278 54.3
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 8.1e-62 241.5 281 52.3
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 1.1e-61 241.1 284 52.5
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 2.6e-60 236.5 260 53.1
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 7.6e-60 235.0 231 60.6
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 9.9e-60 234.6 277 51.3
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 1.3e-59 234.2 265 52.8
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 1.7e-59 233.8 287 50.2
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 2.2e-59 233.4 275 52.0
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 1.9e-58 230.3 278 51.1
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 3.2e-58 229.6 289 49.1
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 1.2e-57 227.6 263 49.8
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 1.2e-57 227.6 265 49.1
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 1.6e-57 227.3 229 53.7
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 2.1e-57 226.9 260 53.8
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 2.7e-57 226.5 278 49.3
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 2.7e-57 226.5 225 54.7
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 1.0e-56 224.6 235 57.0
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 3.0e-56 223.0 245 53.1
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.5e-55 220.7 262 51.5
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.6e-54 217.2 226 57.5
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 3.6e-54 216.1 249 53.8
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 3.4e-52 209.5 258 50.4
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 5.8e-52 208.8 226 56.2
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 9.9e-52 208.0 242 52.5
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.7e-51 207.2 206 57.3
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 2.9e-51 206.5 228 53.9
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 1.1e-50 204.5 288 47.2
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 1.9e-50 203.8 249 51.0
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.9e-50 203.8 229 53.3
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 2.7e-49 199.9 243 50.2
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 2.7e-49 199.9 252 47.6
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 2.7e-49 199.9 290 45.9
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 1.0e-48 198.0 262 48.1
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 1.0e-48 198.0 247 51.4
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 1.3e-48 197.6 227 52.4
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 5.1e-48 195.7 229 52.0
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 5.1e-48 195.7 229 49.8
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 5.1e-48 195.7 230 49.1
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 1.1e-47 194.5 274 44.9
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 1.9e-47 193.7 249 47.0
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 8.1e-46 188.3 248 48.0
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 2.4e-45 186.8 258 47.7
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 9.0e-45 184.9 209 51.2
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 1.2e-44 184.5 250 46.4
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 1.2e-44 184.5 250 46.4
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 3.4e-44 183.0 247 43.3
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 7.6e-44 181.8 242 46.7
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 2.2e-43 180.3 232 48.3
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 3.8e-43 179.5 239 45.6
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 8.4e-43 178.3 249 45.4
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 8.4e-43 178.3 256 44.1
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 4.2e-42 176.0 227 48.9
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 7.1e-42 175.3 261 43.7
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 9.3e-42 174.9 181 56.9
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 1.2e-41 174.5 262 43.1
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 3.0e-40 169.9 252 44.4
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.9e-39 167.2 270 43.7
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 5.6e-39 165.6 252 42.5
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 2.2e-35 153.7 165 53.9
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 8.4e-35 151.8 209 45.9
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 6.0e-33 145.6 159 53.5
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 6.7e-32 142.1 197 46.7
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 8.2e-30 135.2 216 42.6
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 1.1e-26 124.8 191 43.5
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 1.4e-26 124.4 133 53.4
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 4.6e-25 119.4 179 44.1
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 7.9e-25 118.6 135 50.4
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 5.1e-24 115.9 176 43.2
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 3.3e-23 113.2 134 50.0
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 1.6e-22 110.9 134 49.3
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.1e-21 108.2 78 70.5
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 1.4e-21 107.8 242 34.3
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 1.8e-21 107.5 190 40.0
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 6.9e-21 105.5 209 37.3
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 2.6e-20 103.6 97 57.7
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 1.0e-19 101.7 177 38.4
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 1.3e-19 101.3 62 79.0
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 5.0e-19 99.4 195 36.9
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 8.5e-19 98.6 94 58.5
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 7.2e-18 95.5 79 68.4
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.3e-16 90.5 72 68.1
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 8.8e-16 88.6 201 33.8
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 9.7e-15 85.1 119 42.0
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.4e-13 80.5 85 52.9
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 5.3e-13 79.3 111 44.1
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 9.1e-13 78.6 75 60.0
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 2.6e-12 77.0 189 34.9
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 4.5e-12 76.3 78 55.1
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 5.5e-10 69.3 104 36.5
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 1.8e-08 64.3 92 39.1
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 7.4e-07 58.9 85 41.2
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 2.2e-06 57.4 81 39.5
AagrBONN_evm.TU.Sc2ySwM_368.1216 Anthoceros agrestis HOM05D003003 ORTHO05D009423 2.8e-06 57.0 94 37.2
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 2.8e-06 57.0 90 36.7
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 3.7e-06 56.6 90 35.6
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 3.7e-06 56.6 83 36.1
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 3.7e-06 56.6 81 37.0
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 4.8e-06 56.2 83 36.1
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 4.8e-06 56.2 84 35.7
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 4.8e-06 56.2 81 35.8
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 4.8e-06 56.2 81 38.3
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 4.8e-06 56.2 81 35.8
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 4.8e-06 56.2 81 35.8
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 6.3e-06 55.8 81 37.0
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 6.3e-06 55.8 83 34.9
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 6.3e-06 55.8 83 34.9
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 6.3e-06 55.8 83 34.9
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 6.3e-06 55.8 83 34.9
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 6.3e-06 55.8 80 38.8
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 6.3e-06 55.8 81 35.8
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 6.3e-06 55.8 81 38.3
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 6.3e-06 55.8 81 38.3
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 8.2e-06 55.5 90 35.6
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 8.2e-06 55.5 81 35.8
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 8.2e-06 55.5 81 37.0
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 8.2e-06 55.5 81 37.0
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 8.2e-06 55.5 81 35.8
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 8.2e-06 55.5 81 35.8
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 8.2e-06 55.5 81 38.3


User provided reference genes

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