Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 3.5e-197 691.4 350 100.0
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 7.4e-179 630.6 345 94.5
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 3.0e-172 608.6 315 98.7
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 1.5e-160 569.7 299 97.3
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 8.0e-149 530.8 350 81.1
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 4.4e-139 498.4 300 85.0
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 3.6e-133 478.8 299 86.0
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 2.1e-117 426.4 322 69.9
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 8.1e-109 397.9 322 67.4
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 1.3e-103 380.6 325 61.8
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 1.5e-102 377.1 322 61.5
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 3.3e-102 375.9 321 60.1
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 1.2e-99 367.5 319 62.1
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 4.4e-99 365.5 341 60.4
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 4.2e-97 359.0 318 58.5
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 5.4e-97 358.6 322 58.7
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 7.1e-97 358.2 303 61.1
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 1.7e-95 353.6 301 60.1
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 2.3e-95 353.2 323 57.6
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 5.1e-95 352.1 322 57.8
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 3.3e-94 349.4 322 57.5
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 2.8e-93 346.3 301 59.8
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 8.1e-93 344.7 301 59.5
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.1e-92 344.4 301 59.8
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 2.6e-91 339.7 324 55.6
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 4.4e-91 339.0 311 56.3
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 7.6e-91 338.2 323 54.5
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 2.9e-90 336.3 324 55.9
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 3.8e-90 335.9 325 55.1
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 4.9e-90 335.5 327 56.9
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 1.4e-89 334.0 314 55.7
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 1.9e-89 333.6 320 55.9
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 1.9e-89 333.6 318 56.0
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 2.4e-89 333.2 317 57.1
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 2.4e-89 333.2 314 55.7
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 2.4e-89 333.2 326 54.9
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 2.1e-88 330.1 320 53.4
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 4.6e-88 328.9 305 58.4
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 1.7e-87 327.0 316 55.1
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 3.9e-87 325.9 320 55.3
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 6.6e-87 325.1 321 57.3
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 8.7e-87 324.7 310 54.8
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 1.1e-86 324.3 319 54.2
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 1.9e-86 323.6 319 52.7
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 1.9e-86 323.6 307 56.0
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 2.5e-86 323.2 311 53.4
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 3.3e-86 322.8 329 55.0
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 5.6e-86 322.0 329 55.0
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 5.6e-86 322.0 342 51.2
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 1.3e-85 320.9 304 53.6
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 3.6e-85 319.3 337 54.9
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 8.1e-85 318.2 304 54.9
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 8.1e-85 318.2 298 56.4
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 1.1e-84 317.8 315 53.7
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 1.1e-84 317.8 352 50.3
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 1.4e-84 317.4 317 53.9
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 1.8e-84 317.0 291 55.0
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 1.8e-84 317.0 304 56.6
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 4.0e-84 315.8 321 52.6
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 4.0e-84 315.8 307 55.7
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 4.0e-84 315.8 316 53.2
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 1.5e-83 313.9 303 53.8
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 3.4e-83 312.8 304 54.3
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 3.4e-83 312.8 322 54.0
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 5.8e-83 312.0 307 53.7
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 1.3e-82 310.8 316 51.6
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 2.2e-82 310.1 314 50.3
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 2.9e-82 309.7 311 52.1
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 4.9e-82 308.9 304 53.3
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 6.4e-82 308.5 297 53.5
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 3.2e-81 306.2 310 51.6
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 3.2e-81 306.2 299 53.2
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 3.2e-81 306.2 299 53.2
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 3.2e-81 306.2 318 54.4
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 5.4e-81 305.4 292 55.5
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 9.3e-81 304.7 301 55.1
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 2.1e-80 303.5 327 50.2
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 2.1e-80 303.5 316 51.6
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 7.9e-80 301.6 331 51.7
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 1.0e-79 301.2 307 51.1
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 1.3e-79 300.8 308 51.9
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 1.8e-79 300.4 305 50.8
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 1.8e-79 300.4 186 74.2
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 1.8e-79 300.4 365 47.4
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 2.3e-79 300.1 295 54.9
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 2.3e-79 300.1 331 49.8
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 1.1e-78 297.7 311 51.8
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 2.1e-77 293.5 298 53.4
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 3.7e-77 292.7 295 52.2
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 4.0e-76 289.3 306 52.3
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 2.7e-72 276.6 297 51.9
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 3.0e-71 273.1 296 51.7
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.3e-69 267.7 298 50.3
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 5.5e-65 252.3 241 58.1
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 7.1e-65 251.9 184 63.0
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 7.4e-62 241.9 293 47.4
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 2.2e-61 240.4 298 44.3
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 6.9e-60 235.3 316 44.0
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 4.2e-57 226.1 237 51.9
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 6.1e-56 222.2 295 42.7
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 8.2e-53 211.8 322 40.7
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 2.4e-52 210.3 273 45.1
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 2.4e-44 183.7 343 32.9
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 1.2e-43 181.4 218 46.8
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 3.5e-35 153.3 270 38.5
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 2.7e-32 143.7 187 36.9
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 3.6e-32 143.3 198 37.4
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 3.0e-31 140.2 281 35.2
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 4.4e-30 136.3 186 36.6
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.7e-29 134.4 231 33.8
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.2e-22 111.7 72 69.4
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.4e-15 88.2 231 27.3
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 7.0e-12 75.9 51 58.8
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 2.7e-11 73.9 61 52.5
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 3.5e-11 73.6 61 54.1
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 8.6e-10 68.9 58 58.6
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 1.6e-08 64.7 30 96.7
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 1.2e-06 58.5 30 86.7
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 5.8e-06 56.2 164 26.2
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 9.8e-06 55.5 34 67.6
Nitab4.5_0001379g0140 Nicotiana tabacum HOM05D006228 ORTHO05D007847 9.8e-06 55.5 29 72.4


User provided reference genes

Program Settings