Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.8e-249 865.5 457 100.0
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.1e-246 856.3 457 99.1
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.1e-234 815.5 457 93.9
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 7.5e-232 807.0 453 94.3
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 5.1e-220 767.7 426 94.8
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 5.8e-200 701.0 463 80.8
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 1.8e-177 626.3 468 72.0
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 7.7e-168 594.3 468 67.1
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 1.5e-163 580.1 318 98.7
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 1.7e-135 486.9 477 54.9
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 3.2e-134 482.6 479 55.5
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 2.6e-131 473.0 476 55.3
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 3.4e-131 472.6 471 55.0
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 4.9e-130 468.8 479 54.1
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 9.2e-129 464.5 480 54.4
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 1.6e-128 463.8 470 53.2
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 7.8e-128 461.5 482 53.1
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 9.5e-126 454.5 473 52.0
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 3.6e-125 452.6 477 53.9
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 5.2e-124 448.7 469 54.4
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 2.6e-123 446.4 470 53.2
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 2.2e-122 443.4 485 51.5
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 4.9e-122 442.2 479 51.8
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 6.4e-122 441.8 459 52.7
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 1.2e-120 437.6 473 49.9
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 3.5e-120 436.0 461 50.8
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.0e-119 434.5 462 52.4
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 1.7e-119 433.7 471 51.8
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 2.3e-119 433.3 461 50.5
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 3.0e-119 433.0 472 50.2
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 3.0e-119 433.0 473 52.4
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 5.0e-119 432.2 462 52.2
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 6.6e-119 431.8 471 53.7
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 1.5e-118 430.6 464 50.4
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 1.5e-118 430.6 464 50.4
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 1.5e-118 430.6 464 50.4
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 5.6e-118 428.7 473 52.4
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 5.6e-118 428.7 474 53.8
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 7.3e-118 428.3 465 49.9
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 2.8e-117 426.4 482 50.0
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 6.2e-117 425.2 476 50.2
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 1.8e-116 423.7 466 49.4
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 1.8e-116 423.7 481 49.9
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 2.3e-116 423.3 468 50.2
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 8.9e-116 421.4 469 50.3
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 3.4e-115 419.5 461 48.8
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 2.2e-114 416.8 464 48.1
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 3.7e-114 416.0 466 48.3
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 3.7e-114 416.0 467 49.0
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.7e-114 416.0 476 50.0
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 6.4e-114 415.2 468 47.9
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 2.4e-113 413.3 470 48.7
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 5.4e-113 412.1 469 49.9
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 5.4e-113 412.1 465 50.1
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 7.0e-113 411.8 458 50.0
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 2.7e-112 409.8 470 47.4
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 3.5e-112 409.5 460 50.2
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 1.0e-111 407.9 466 47.0
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 6.6e-111 405.2 466 47.2
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 3.3e-110 402.9 467 47.3
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 4.3e-110 402.5 426 52.6
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 4.7e-109 399.1 451 50.8
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 1.1e-108 397.9 480 48.3
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 3.1e-108 396.4 455 48.1
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 1.2e-107 394.4 475 46.5
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 7.5e-107 391.7 448 49.1
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 1.3e-106 391.0 446 50.2
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 6.4e-106 388.7 461 46.6
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 1.4e-105 387.5 465 48.0
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 2.4e-105 386.7 461 46.2
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 4.1e-105 386.0 473 46.9
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 9.2e-105 384.8 457 47.0
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 1.2e-104 384.4 363 54.5
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 1.7e-103 380.6 459 46.6
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 4.3e-102 375.9 406 53.0
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.6e-101 374.0 407 52.8
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 6.2e-101 372.1 403 50.9
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 1.1e-100 371.3 465 45.4
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 4.4e-99 365.9 429 49.7
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 2.9e-98 363.2 418 51.0
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 8.4e-98 361.7 417 49.9
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 8.7e-95 351.7 407 48.6
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 2.0e-91 340.5 459 41.2
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 4.4e-91 339.3 406 47.0
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 3.8e-90 336.3 462 43.1
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.9e-82 309.3 374 47.6
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 2.4e-76 290.4 596 33.2
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.0e-76 289.7 360 47.2
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 5.8e-75 285.8 228 59.6
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 6.4e-74 282.3 470 41.1
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.2e-72 278.1 228 57.5
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 2.9e-66 256.9 439 38.5
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 4.1e-60 236.5 248 49.2
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 7.6e-59 232.3 270 50.7
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 9.7e-54 215.3 465 34.8
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 3.7e-53 213.4 548 29.7
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.4e-52 210.7 453 36.4
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 2.6e-46 190.7 142 65.5
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 4.4e-46 189.9 450 31.1
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 2.7e-40 170.6 448 33.0
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 4.1e-36 156.8 429 32.9
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 5.0e-34 149.8 522 24.7
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 9.4e-33 145.6 115 60.9
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.2e-32 145.2 311 32.8
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 4.7e-32 143.3 232 42.7
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.3e-26 125.2 166 45.2
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 4.2e-25 120.2 236 38.6
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 6.6e-18 96.3 108 55.6
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 6.6e-18 96.3 138 45.7
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 1.2e-16 92.0 127 44.1
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 4.7e-16 90.1 91 53.8
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 9.8e-14 82.4 121 38.0
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 1.2e-08 65.5 182 31.9
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 3.6e-08 63.9 105 42.9


User provided reference genes

Program Settings