Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.7e-188 663.7 748 100.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.4e-166 590.1 748 89.4
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 3.3e-152 543.1 723 86.0
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.3e-152 542.7 723 85.6
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.4e-105 388.3 725 71.6
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.5e-91 340.9 234 90.6
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 6.0e-85 319.7 714 43.4
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 3.6e-74 283.9 732 50.0
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 4.0e-73 280.4 726 45.6
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.2e-69 268.9 533 52.9
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.1e-62 245.7 696 54.0
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.3e-60 238.0 730 54.8
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 3.8e-55 220.7 638 49.8
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.3e-52 212.2 708 40.3
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.1e-51 209.1 539 42.1
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.5e-51 208.8 717 50.9
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.9e-51 208.4 533 41.5
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.9e-51 208.4 538 41.3
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 6.9e-49 199.9 729 56.7
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 4.5e-48 197.2 764 46.9
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 6.4e-47 193.4 756 49.5
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.5e-46 190.3 540 39.3
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 9.3e-46 189.5 719 45.8
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 5.1e-44 183.7 730 51.4
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.5e-43 182.2 729 54.5
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 3.7e-42 177.6 539 41.7
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 3.7e-42 177.6 532 43.6
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 6.2e-42 176.8 622 53.9
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.5e-40 172.2 547 45.2
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.5e-40 170.6 723 38.3
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 7.6e-40 169.9 236 44.9
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.3e-39 169.1 724 48.8
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.3e-39 169.1 537 37.6
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.2e-38 164.5 561 30.3
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 4.2e-38 164.1 241 44.8
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 5.5e-38 163.7 828 43.5
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.2e-37 162.5 561 28.9
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.7e-37 161.4 565 28.8
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.7e-37 161.4 536 34.3
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.0e-36 159.5 144 61.8
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.3e-36 158.3 486 44.0
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 4.3e-35 154.1 585 45.0
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 5.7e-35 153.7 730 50.8
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 9.7e-35 152.9 509 39.5
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.6e-34 152.1 727 44.2
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 4.8e-34 150.6 684 32.2
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 4.8e-34 150.6 722 43.8
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.1e-33 149.4 525 34.7
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.1e-33 149.4 715 52.7
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.4e-33 148.3 235 43.4
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 4.1e-33 147.5 747 46.2
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 4.1e-33 147.5 719 44.5
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.5e-32 145.6 504 36.3
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 2.6e-32 144.8 678 43.5
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 3.4e-32 144.4 537 47.7
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 5.9e-32 143.7 738 38.3
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.0e-31 142.9 191 47.1
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.3e-31 142.5 188 50.5
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.3e-31 142.5 234 41.9
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.7e-31 142.1 246 39.8
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.7e-31 142.1 240 42.9
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 3.8e-31 141.0 744 60.5
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 8.5e-31 139.8 566 51.2
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 1.4e-30 139.0 239 40.2
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 1.2e-29 136.0 237 37.6
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 2.1e-29 135.2 238 38.2
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.7e-29 134.8 235 37.9
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 2.7e-29 134.8 725 46.2
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 3.6e-29 134.4 235 38.3
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 3.6e-29 134.4 541 30.1
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 4.6e-29 134.0 195 45.6
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.4e-28 132.5 199 45.2
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.4e-28 132.5 721 52.4
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.4e-28 132.5 496 40.7
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.4e-28 132.5 221 38.9
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 3.9e-28 131.0 525 39.4
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.1e-27 129.4 525 29.7
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.9e-27 128.6 237 40.9
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.5e-27 128.3 235 40.9
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 3.3e-27 127.9 729 34.0
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.3e-27 127.9 202 42.1
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 3.3e-27 127.9 221 40.7
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 4.3e-27 127.5 565 50.6
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 7.4e-27 126.7 692 49.0
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 9.7e-27 126.3 241 40.7
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-26 125.9 189 44.4
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.3e-26 125.9 189 44.4
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.3e-26 125.9 189 44.4
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 2.8e-26 124.8 204 42.2
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 3.7e-26 124.4 665 37.4
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 8.2e-26 123.2 231 35.5
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 8.2e-26 123.2 196 40.8
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.4e-25 122.5 228 41.7
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 4.1e-25 120.9 525 45.0
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 4.5e-24 117.5 191 41.9
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 4.5e-24 117.5 525 37.7
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 4.5e-24 117.5 632 49.7
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 7.7e-24 116.7 241 37.8
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 7.7e-24 116.7 218 40.4
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 5.0e-23 114.0 123 62.6
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.4e-22 112.5 665 39.7
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.5e-22 111.7 238 38.2
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 5.5e-22 110.5 177 41.2
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 7.2e-22 110.2 218 34.9
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 1.2e-21 109.4 707 42.0
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 1.6e-21 109.0 184 43.5
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 2.7e-21 108.2 104 58.7
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 3.6e-21 107.8 188 44.7
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 4.7e-21 107.5 724 46.1
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 4.4e-19 100.9 497 41.6
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 5.7e-19 100.5 530 29.6
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 9.7e-19 99.8 122 49.2
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 9.7e-19 99.8 700 44.0
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 2.8e-18 98.2 689 39.2
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 3.1e-17 94.7 183 39.9
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 7.0e-17 93.6 711 48.0
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 9.1e-17 93.2 131 45.0
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 9.1e-17 93.2 131 45.0
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 9.1e-17 93.2 235 31.5
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 2.6e-16 91.7 189 30.2
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 3.4e-16 91.3 225 33.3
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 3.8e-15 87.8 240 34.6
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 3.8e-15 87.8 241 33.2
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 1.9e-14 85.5 490 30.6
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.2e-13 82.8 175 38.9
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 8.0e-13 80.1 141 34.0
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 1.5e-11 75.9 241 32.0
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 2.0e-11 75.5 229 31.9
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 3.3e-11 74.7 335 34.9
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 3.3e-11 74.7 61 63.9
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.3e-10 72.8 422 23.9
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 2.2e-10 72.0 311 64.3
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.2e-10 72.0 172 29.7
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 6.3e-10 70.5 422 24.2
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 6.3e-10 70.5 150 28.7
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.4e-09 69.3 154 31.2
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.1e-09 68.2 101 44.6
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 5.3e-09 67.4 80 45.0
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 9.1e-09 66.6 236 26.7
CSS0005738 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.6e-08 65.9 53 64.2
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 5.0e-07 60.8 91 39.6
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 6.5e-07 60.5 43 74.4
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 1.5e-06 59.3 107 33.6


User provided reference genes

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