Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.9e-148 529.3 284 100.0
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 7.2e-124 447.6 284 87.7
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.6e-118 429.9 287 84.7
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.6e-115 419.9 296 83.4
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.7e-109 399.8 293 79.5
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 1.9e-87 326.6 286 67.5
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 7.8e-86 321.2 286 67.1
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 6.6e-85 318.2 281 67.6
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.9e-84 316.6 288 65.6
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 7.3e-76 288.1 288 62.5
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.4e-74 283.9 285 59.6
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 8.9e-74 281.2 286 57.7
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 7.6e-73 278.1 283 56.9
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 3.2e-71 272.7 285 55.1
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 1.2e-70 270.8 276 53.3
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 2.7e-70 269.6 289 54.3
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 7.8e-70 268.1 285 57.9
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 5.1e-69 265.4 292 57.2
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 5.1e-69 265.4 277 54.5
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 1.1e-68 264.2 282 56.4
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 1.1e-68 264.2 281 56.9
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.5e-68 263.8 277 54.2
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 1.2e-67 260.8 286 57.7
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 1.2e-67 260.8 283 58.0
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 2.8e-67 259.6 284 53.2
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 3.6e-67 259.2 281 56.6
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 2.4e-66 256.5 274 53.6
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 4.0e-66 255.8 302 53.3
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 1.2e-65 254.2 305 54.4
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 2.0e-65 253.4 286 53.8
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 2.6e-65 253.1 282 55.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 2.6e-65 253.1 286 56.3
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 7.6e-65 251.5 272 58.1
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 4.9e-64 248.8 280 55.7
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.1e-63 247.7 280 52.9
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 3.2e-63 246.1 276 56.5
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 4.2e-63 245.7 306 51.3
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 4.2e-63 245.7 283 54.4
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 1.2e-62 244.2 271 57.2
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 1.6e-62 243.8 285 54.4
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.7e-62 243.0 276 56.2
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 3.5e-62 242.7 286 50.3
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.5e-62 242.7 287 51.2
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 4.6e-62 242.3 285 56.5
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 7.8e-62 241.5 278 55.8
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 5.1e-61 238.8 279 52.0
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 6.6e-61 238.4 291 54.6
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 8.7e-61 238.0 217 63.1
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 1.5e-60 237.3 278 50.4
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.9e-60 236.9 310 49.0
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 9.6e-60 234.6 275 53.8
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.3e-59 234.2 280 55.7
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 2.1e-59 233.4 296 51.7
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 2.8e-59 233.0 284 53.9
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 4.8e-59 232.3 272 53.3
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.1e-58 231.1 231 62.8
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 4.0e-58 229.2 278 51.1
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 5.3e-58 228.8 226 58.8
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.2e-57 227.6 277 53.8
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.7e-56 223.8 283 53.0
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 3.8e-56 222.6 279 52.7
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 4.9e-56 222.2 293 52.9
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 4.9e-56 222.2 276 53.6
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 4.9e-56 222.2 272 52.9
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.9e-55 220.3 273 49.5
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 4.2e-55 219.2 278 51.1
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.2e-54 217.6 300 49.7
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.1e-54 216.9 108 96.3
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.7e-54 216.5 215 56.7
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 3.5e-54 216.1 278 50.4
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 6.0e-54 215.3 292 52.4
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 7.9e-54 214.9 228 56.1
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.7e-53 213.8 275 49.8
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 3.0e-53 213.0 278 46.4
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 5.1e-53 212.2 271 51.7
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 6.6e-53 211.8 227 55.5
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.9e-52 210.3 231 56.7
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 7.4e-52 208.4 226 56.6
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 7.4e-52 208.4 281 50.9
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 7.4e-52 208.4 226 56.2
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 7.4e-52 208.4 221 58.8
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.3e-51 207.6 229 55.5
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.3e-51 207.6 226 56.6
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 1.3e-51 207.6 224 56.7
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 3.6e-51 206.1 234 53.4
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 3.6e-51 206.1 230 55.2
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 3.6e-51 206.1 271 51.7
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 6.2e-51 205.3 296 48.0
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 8.1e-51 204.9 224 54.9
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 8.1e-51 204.9 227 55.1
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 1.4e-50 204.1 224 55.8
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 6.9e-50 201.8 284 48.9
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-49 200.7 225 55.6
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 2.0e-49 200.3 296 44.9
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 2.6e-49 199.9 284 49.6
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 7.6e-49 198.4 277 43.7
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 9.9e-49 198.0 214 56.5
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 9.9e-49 198.0 283 48.1
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 1.7e-48 197.2 268 48.1
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 2.9e-48 196.4 245 53.5
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 9.3e-47 191.4 272 46.0
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.1e-46 190.3 274 44.2
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 3.5e-46 189.5 277 43.0
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.8e-45 187.2 288 44.1
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.1e-44 184.5 255 50.2
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.5e-44 184.1 258 45.7
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 3.3e-44 183.0 284 41.5
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 7.4e-44 181.8 279 40.5
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-43 180.3 268 42.9
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.8e-43 179.9 277 41.5
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.7e-43 179.5 283 41.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 3.7e-43 179.5 280 41.8
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 6.9e-42 175.3 280 42.1
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 9.0e-42 174.9 267 41.9
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 4.5e-41 172.6 274 40.1
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 1.3e-40 171.0 119 68.9
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.7e-40 170.6 274 40.5
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 3.8e-40 169.5 265 46.4
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 8.4e-40 168.3 283 39.2
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 8.4e-40 168.3 278 39.6
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 2.5e-39 166.8 117 68.4
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.2e-39 166.4 274 43.1
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.2e-38 164.5 290 39.3
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.0e-37 161.4 283 44.9
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 2.3e-37 160.2 222 45.5
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 3.9e-37 159.5 283 45.2
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 3.9e-37 159.5 276 39.1
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.1e-34 151.4 101 69.3
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 2.6e-33 146.7 258 37.6
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.4e-33 146.4 269 37.2
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.9e-31 140.6 103 63.1
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-31 140.6 112 58.9
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 2.5e-31 140.2 124 55.6
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 2.5e-31 140.2 124 55.6
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-30 137.9 128 53.9
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.3e-29 134.4 289 34.6
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 1.8e-29 134.0 280 34.3
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-28 131.3 259 35.9
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 3.1e-26 123.2 103 56.3
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-25 121.3 199 38.2
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 2.0e-25 120.6 103 54.4
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 1.3e-24 117.9 95 57.9
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 1.7e-24 117.5 75 72.0
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 2.2e-24 117.1 97 55.7
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 8.5e-24 115.2 86 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 1.9e-23 114.0 272 30.9
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.9e-23 114.0 297 34.7
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 5.7e-20 102.4 86 54.7
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 7.4e-20 102.1 79 62.0
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 1.8e-18 97.4 287 27.5
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 1.2e-14 84.7 213 34.7
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 1.6e-14 84.3 97 55.7
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 5.7e-12 75.9 348 26.4
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.8e-11 73.6 122 40.2
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.6e-09 67.8 65 52.3
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.1e-07 61.6 45 64.4


User provided reference genes

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