Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1536.9 820 100.0
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1526.1 820 99.3
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1524.6 820 99.1
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1517.7 820 98.9
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1516.5 820 98.8
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1465.3 824 95.3
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1346.3 823 86.1
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1320.1 820 84.5
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1283.5 828 83.9
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1241.9 841 78.4
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1235.3 823 80.6
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1231.5 816 78.9
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1231.1 813 78.7
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1227.6 836 79.4
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1226.1 813 78.2
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1220.3 833 78.4
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1217.2 828 78.1
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1206.0 826 77.2
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1205.3 788 80.1
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1204.9 820 77.9
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1201.8 828 76.8
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1194.5 817 76.5
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1194.1 829 77.7
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1192.6 826 77.5
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1192.6 825 77.2
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1187.9 815 78.2
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1186.4 827 76.2
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1186.0 831 77.0
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1183.3 837 76.3
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1181.4 831 76.9
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1179.9 828 76.4
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1176.4 825 77.5
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1174.5 836 73.9
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1171.0 820 76.3
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1168.3 827 76.2
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1168.3 830 76.4
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1166.8 832 76.2
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1164.1 830 76.6
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1163.3 934 70.0
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1162.9 835 75.7
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1159.8 835 75.7
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1157.9 830 73.3
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1156.7 826 75.8
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1155.6 821 74.3
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 825 75.2
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1142.5 826 74.9
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 835 71.6
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 837 71.4
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1138.6 835 71.7
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1138.3 835 71.5
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 815 74.6
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1133.2 822 74.8
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1126.3 790 74.3
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1123.2 856 73.2
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1121.3 810 71.2
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1120.5 829 72.0
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1114.8 827 74.0
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1114.8 829 73.1
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1114.4 832 71.3
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1111.3 827 71.2
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1108.2 831 72.6
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 832 72.7
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 830 70.6
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 832 72.6
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 850 68.7
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1095.1 839 69.7
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1094.3 850 68.6
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 830 69.6
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1092.4 824 70.0
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 829 69.7
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1089.3 824 70.8
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1087.4 826 71.2
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1085.5 837 69.3
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1082.0 825 69.9
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1081.2 819 70.2
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1078.9 888 66.6
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1078.5 836 68.5
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 1.1e-311 1072.8 818 69.8
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 2.8e-311 1071.6 817 69.9
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 5.0e-311 1070.8 808 70.3
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 5.0e-311 1070.8 827 69.2
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 2.5e-310 1068.5 817 69.6
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 2.5e-310 1068.5 823 69.4
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 4.3e-310 1067.8 825 69.1
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 9.4e-310 1066.6 808 69.9
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 2.1e-309 1065.4 808 69.8
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 6.8e-308 1060.4 822 68.4
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 7.0e-305 1050.4 828 66.8
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 758 71.1
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 2.1e-301 1038.9 900 62.7
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 8.0e-301 1036.9 818 65.8
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 1.2e-296 1023.1 827 66.0
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 1.2e-296 1023.1 822 65.1
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 1.6e-296 1022.7 667 76.8
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 1.7e-295 1019.2 731 71.1
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 4.6e-288 994.6 651 77.0
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 7.8e-288 993.8 828 65.7
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 5.0e-287 991.1 651 77.1
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 8.3e-282 973.8 821 63.0
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 1.1e-281 973.4 704 70.5
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 5.4e-281 971.1 819 65.0
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 3.3e-278 961.8 753 68.5
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 9.9e-275 950.3 635 76.7
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 4.1e-273 944.9 916 58.5
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.0e-271 940.3 795 63.1
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 3.6e-269 931.8 622 74.6
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.4e-265 919.8 790 59.7
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 6.6e-263 911.0 571 79.7
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 5.3e-252 874.8 788 56.9
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.6e-251 872.5 788 56.6
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 2.1e-240 836.3 785 54.9
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.0e-226 790.8 831 57.8
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 3.9e-223 778.9 782 57.0
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.5e-222 776.9 794 52.3
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 3.1e-204 716.1 427 84.8
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 2.8e-168 596.7 479 67.2
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.3e-161 573.2 439 70.2
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 5.6e-137 492.7 319 79.0
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 5.1e-130 469.5 779 37.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.1e-128 464.2 304 74.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.4e-124 451.4 285 79.3
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 1.9e-116 424.5 797 33.8
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.0e-113 414.5 378 60.6
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 4.2e-108 396.7 359 68.5
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 9.1e-95 352.4 857 30.5
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.4e-81 307.4 278 64.4
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 9.5e-68 262.7 381 50.4
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 7.5e-57 226.5 225 59.6
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 7.8e-46 189.9 131 70.2
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.3e-45 189.1 153 65.4
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.6e-43 182.2 142 70.4
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 2.6e-41 174.9 125 70.4
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 6.6e-37 160.2 149 57.7
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 8.7e-37 159.8 149 57.7
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 7.6e-33 146.7 121 67.8
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 6.4e-32 143.7 158 52.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 6.0e-14 84.0 70 61.4
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 6.2e-11 73.9 133 42.1


User provided reference genes

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