Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-196 689.9 371 100.0
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.2e-196 688.3 371 99.7
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 9.2e-188 660.2 371 96.0
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 9.2e-188 660.2 371 96.0
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 2.0e-182 642.5 371 93.3
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.9e-148 529.6 375 80.0
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 6.3e-136 488.0 380 74.7
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 7.4e-129 464.5 380 71.8
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 9.1e-127 457.6 369 72.4
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.3e-125 453.8 365 72.9
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.2e-123 447.2 378 68.3
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 3.0e-122 442.6 379 70.2
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 2.2e-120 436.4 376 67.8
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.1e-119 434.1 367 69.2
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.5e-118 429.1 363 70.0
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-117 427.6 355 69.9
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.0e-117 427.6 355 69.9
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.8e-117 425.6 387 67.2
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 5.0e-117 425.2 385 66.2
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 8.5e-117 424.5 371 68.5
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-116 422.9 355 69.0
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-116 422.2 362 69.3
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 7.2e-116 421.4 376 68.1
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 2.1e-115 419.9 403 64.0
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 2.1e-115 419.9 368 67.1
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 6.1e-115 418.3 368 68.5
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 4.0e-114 415.6 390 66.2
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 4.0e-114 415.6 368 66.8
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 4.4e-113 412.1 443 58.9
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 3.7e-112 409.1 364 67.3
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 4.8e-112 408.7 402 63.7
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 3.1e-111 406.0 383 65.5
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.6e-110 403.7 364 66.5
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.5e-105 387.1 400 58.5
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 5.7e-105 385.2 410 57.3
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.2e-104 383.3 400 57.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 8.3e-104 381.3 405 58.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.1e-103 380.9 305 71.5
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.8e-103 380.2 365 62.5
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 4.1e-103 379.0 406 59.1
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 4.1e-103 379.0 379 61.2
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 5.4e-103 378.6 351 63.8
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.6e-102 377.1 337 68.5
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.5e-102 375.6 373 62.2
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 5.0e-101 372.1 383 61.4
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 4.3e-100 369.0 390 58.2
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 7.3e-100 368.2 370 62.7
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.1e-99 366.7 384 60.9
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 2.8e-99 366.3 390 59.5
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.0e-98 364.4 382 60.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 4.0e-98 362.5 370 63.0
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 8.9e-98 361.3 380 56.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.5e-97 360.5 382 60.7
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 2.6e-97 359.8 404 57.4
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 4.4e-97 359.0 370 62.7
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 9.8e-97 357.8 444 54.5
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 6.4e-96 355.1 386 59.3
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 7.0e-95 351.7 403 54.8
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.7e-93 347.1 446 52.9
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.7e-93 347.1 423 54.4
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 3.9e-93 345.9 394 56.3
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 5.0e-93 345.5 424 52.6
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 8.6e-93 344.7 470 49.8
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.9e-92 343.6 382 58.4
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 5.6e-92 342.0 425 52.5
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.6e-91 340.5 422 55.2
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 5.2e-90 335.5 392 57.9
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.2e-89 334.3 385 57.1
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 4.4e-89 332.4 469 49.5
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.9e-88 329.7 398 52.8
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 8.3e-88 328.2 478 46.4
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.4e-87 326.6 472 46.8
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.2e-86 324.3 297 62.0
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.7e-86 323.2 371 56.9
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 2.7e-86 323.2 297 61.6
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 6.0e-86 322.0 383 54.6
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.0e-85 321.2 392 54.3
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.3e-85 320.9 443 48.3
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 3.0e-85 319.7 333 58.9
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.5e-84 317.4 361 57.9
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.1e-82 309.7 375 55.7
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 4.0e-82 309.3 357 57.4
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.5e-81 307.4 387 55.6
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 5.4e-79 298.9 384 52.6
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 7.8e-78 295.0 345 56.8
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.0e-77 294.7 393 51.9
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.0e-77 294.7 356 53.9
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 3.9e-77 292.7 387 50.9
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.9e-76 290.4 397 52.1
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 3.3e-76 289.7 378 51.9
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 4.3e-76 289.3 404 51.0
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 5.6e-76 288.9 394 52.8
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 7.3e-76 288.5 371 50.9
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 9.5e-76 288.1 458 46.1
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 9.5e-76 288.1 479 42.6
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.6e-75 287.3 355 56.1
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.6e-75 287.3 359 54.0
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.1e-75 287.0 395 51.4
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.6e-75 286.2 458 45.6
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 3.6e-75 286.2 376 52.4
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.4e-74 284.3 375 53.6
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 3.8e-72 276.2 459 46.6
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 3.8e-72 276.2 459 46.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 6.4e-72 275.4 385 51.2
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.1e-71 274.6 385 50.4
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.1e-71 274.6 394 50.0
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.4e-71 274.2 482 44.4
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.0e-69 268.1 415 48.0
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 7.3e-68 261.9 344 52.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.8e-66 257.3 421 46.6
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.4e-66 256.9 335 49.3
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.0e-66 256.1 358 52.0
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 4.9e-64 249.2 275 57.5
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 7.8e-62 241.9 265 58.9
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.3e-61 241.1 352 48.6
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 8.7e-61 238.4 422 46.0
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.1e-60 238.0 342 48.2
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.7e-56 224.2 356 45.5
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 8.4e-56 221.9 327 48.0
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.4e-55 221.1 389 42.7
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.6e-54 216.1 441 39.7
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.6e-54 216.1 307 50.5
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 2.8e-51 206.8 269 52.4
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.4e-50 203.8 395 45.1
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 5.8e-49 199.1 371 45.0
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 7.4e-44 182.2 385 43.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.1e-42 178.3 133 70.7
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.3e-37 160.6 335 40.3
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 4.5e-33 146.4 371 38.5
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.3e-29 134.0 163 52.8
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 3.7e-27 126.7 76 85.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.6e-25 120.6 90 71.1
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 6.1e-22 109.4 64 82.8
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.0e-21 108.6 64 82.8
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-20 104.4 66 77.3
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.3e-20 103.6 73 68.5
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 4.4e-20 103.2 352 34.7
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 6.3e-19 99.4 212 40.1
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.4e-17 93.6 373 31.4
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.7e-17 92.4 59 74.6
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.3e-16 91.7 88 64.8
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.3e-16 91.7 58 77.6
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 5.0e-16 89.7 166 44.0
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 7.9e-14 82.4 93 53.8
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 5.7e-12 76.3 201 39.3
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.4e-10 71.6 122 41.0
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-07 60.8 51 64.7
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-07 60.8 51 64.7
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-07 60.8 51 64.7
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-07 60.8 51 64.7
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.2e-07 60.5 36 80.6
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 3.2e-07 60.5 51 64.7
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 5.5e-07 59.7 51 62.7
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 7.2e-07 59.3 51 62.7
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 4.7e-06 56.6 246 33.3
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 8.0e-06 55.8 120 41.7


User provided reference genes

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