Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 9.7e-141 503.4 248 100.0
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 6.5e-129 464.2 248 93.5
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.2e-128 460.7 248 92.7
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 8.2e-124 447.2 248 90.3
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.8e-123 446.0 248 89.9
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 5.5e-112 407.9 250 83.6
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 5.5e-112 407.9 250 83.6
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.7e-97 359.8 254 74.4
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 4.4e-93 345.1 257 70.8
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.7e-84 316.6 256 63.7
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 6.4e-84 314.7 244 64.8
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 8.3e-84 314.3 247 64.0
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 1.4e-83 313.5 246 63.0
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.4e-83 313.5 235 65.5
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 5.4e-83 311.6 251 64.1
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 1.0e-81 307.4 253 61.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 1.3e-81 307.0 234 65.4
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 2.3e-81 306.2 235 65.1
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 3.9e-81 305.4 237 64.6
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 3.9e-81 305.4 230 67.0
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 1.1e-80 303.9 223 66.8
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 1.5e-80 303.5 239 64.4
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 1.5e-80 303.5 256 61.3
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 1.9e-80 303.1 245 64.1
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 1.9e-80 303.1 239 64.4
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 2.5e-80 302.8 260 59.2
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 3.3e-80 302.4 231 64.1
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 4.3e-80 302.0 256 62.1
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 5.6e-80 301.6 245 63.7
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 5.6e-80 301.6 237 64.1
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.2e-79 300.4 235 64.3
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.6e-79 300.1 228 64.9
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 2.1e-79 299.7 239 63.6
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 2.8e-79 299.3 235 63.0
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 2.8e-79 299.3 229 62.9
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 3.6e-79 298.9 244 61.5
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 6.2e-79 298.1 244 62.7
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 1.4e-78 297.0 230 63.9
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 2.3e-78 296.2 258 57.8
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 5.2e-78 295.0 235 63.0
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 5.2e-78 295.0 237 63.3
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 8.9e-78 294.3 245 58.8
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 1.2e-77 293.9 246 59.3
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 1.2e-77 293.9 249 59.4
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 1.2e-77 293.9 242 59.9
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 1.5e-77 293.5 222 65.8
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 4.4e-77 292.0 236 62.7
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 4.4e-77 292.0 217 67.3
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 5.8e-77 291.6 237 62.4
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 7.5e-77 291.2 244 59.4
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 9.8e-77 290.8 232 61.6
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 9.8e-77 290.8 245 58.0
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 9.8e-77 290.8 244 61.9
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 4.9e-76 288.5 246 58.5
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 8.3e-76 287.7 223 63.7
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 1.1e-75 287.3 253 58.9
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 5.4e-75 285.0 247 57.9
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.1e-74 283.1 228 61.4
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 2.1e-74 283.1 226 63.3
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.7e-74 282.7 260 55.8
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 3.5e-74 282.3 237 60.3
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 4.6e-74 282.0 243 58.4
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 3.0e-73 279.3 232 61.2
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 3.9e-73 278.9 230 62.2
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 1.9e-72 276.6 247 56.7
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 3.3e-72 275.8 233 59.7
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 9.5e-72 274.2 230 60.0
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 2.1e-71 273.1 236 58.5
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 2.1e-71 273.1 241 57.7
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 2.8e-71 272.7 231 59.7
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 3.6e-71 272.3 241 56.8
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 6.2e-71 271.6 235 57.9
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 2.0e-69 266.5 257 56.0
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 3.4e-69 265.8 253 54.9
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 3.4e-69 265.8 245 55.5
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 4.4e-69 265.4 237 60.3
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 5.8e-69 265.0 238 57.1
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 5.8e-69 265.0 249 56.6
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 7.5e-69 264.6 226 58.4
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 9.9e-69 264.2 238 56.3
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.7e-68 263.5 249 55.8
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 1.7e-68 263.5 239 58.2
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 1.9e-67 260.0 239 57.7
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 5.4e-67 258.5 228 55.7
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 1.6e-66 256.9 242 54.5
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 4.6e-66 255.4 248 55.6
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 6.0e-66 255.0 248 55.6
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.5e-64 250.4 245 54.3
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 1.9e-64 250.0 244 55.3
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 3.3e-64 249.2 252 53.2
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.2e-63 247.3 244 55.7
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.4e-59 233.8 237 52.3
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 1.2e-55 220.7 214 57.5
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 4.7e-55 218.8 250 48.0
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 7.6e-53 211.5 236 45.8
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 3.0e-49 199.5 212 52.4
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 6.6e-49 198.4 142 64.1
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 8.7e-49 198.0 141 67.4
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.3e-48 194.9 151 64.2
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.8e-47 193.0 152 63.8
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.6e-47 192.6 137 65.7
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.6e-47 192.6 137 65.7
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 4.8e-47 192.2 202 51.5
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 4.9e-44 182.2 215 47.9
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.9e-41 172.6 150 59.3
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 1.1e-40 171.0 206 48.5
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 1.3e-39 167.5 153 57.5
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 3.4e-37 159.5 118 63.6
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 4.5e-37 159.1 267 34.1
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 8.4e-36 154.8 148 52.0
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 4.2e-35 152.5 150 50.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-34 151.0 111 64.0
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 2.7e-34 149.8 144 52.8
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 9.0e-30 134.8 138 48.6
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 2.6e-29 133.3 124 54.8
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.9e-26 121.7 75 70.7
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.8e-25 120.6 79 67.1
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.7e-25 118.2 74 70.3
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 8.7e-25 118.2 75 68.0
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.3e-24 115.9 75 68.0
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.3e-24 115.9 75 68.0
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.3e-24 115.9 76 67.1
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.3e-24 115.9 76 68.4
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.7e-24 115.5 74 68.9
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.5e-21 107.5 70 65.7
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 2.0e-21 107.1 68 70.6
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 3.4e-21 106.3 130 46.9
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 1.2e-18 97.8 111 47.7
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 2.1e-18 97.1 101 52.5
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 2.3e-17 93.6 88 53.4
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 1.3e-15 87.8 55 69.1
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 8.2e-15 85.1 83 54.2
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 1.8e-14 84.0 54 70.4
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 6.9e-14 82.0 64 60.9
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 1.2e-13 81.3 176 34.1
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.2e-13 81.3 51 66.7
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 2.0e-13 80.5 69 53.6
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 3.4e-13 79.7 157 33.1
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 4.5e-13 79.3 53 64.2
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 2.9e-12 76.6 94 42.6
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.8e-12 76.3 45 68.9
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.1e-11 74.7 38 81.6
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 1.4e-11 74.3 177 30.5
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.8e-09 67.4 188 27.1
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-09 66.6 179 26.8
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 3.9e-09 66.2 178 25.3
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 5.1e-09 65.9 36 75.0
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 5.1e-09 65.9 36 77.8
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 2.0e-08 63.9 178 24.7


User provided reference genes

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