Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.3e-254 881.7 433 100.0
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 1.4e-248 862.4 441 96.4
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 4.3e-245 850.9 451 93.8
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.7e-238 827.0 467 89.7
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.3e-236 822.8 438 92.9
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.4e-235 818.5 451 91.4
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 5.7e-213 744.2 441 81.4
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 8.5e-209 730.3 441 79.6
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.1e-208 729.9 438 79.7
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 2.1e-207 725.7 440 79.5
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.9e-201 705.3 438 77.6
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.8e-201 704.9 437 77.6
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 5.0e-201 704.5 439 78.1
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 6.5e-201 704.1 441 76.4
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.4e-200 703.0 439 78.1
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.4e-200 703.0 441 76.4
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.9e-200 702.6 438 76.7
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.9e-200 702.6 441 77.3
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 2.5e-200 702.2 437 77.8
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 7.2e-200 700.7 441 76.2
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.2e-199 699.9 441 76.4
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 2.1e-199 699.1 438 77.6
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 2.7e-199 698.7 438 76.3
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 3.0e-198 695.3 438 76.5
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 3.0e-198 695.3 437 76.4
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.9e-198 694.9 438 76.7
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 6.7e-198 694.1 440 75.9
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.6e-197 692.2 439 75.2
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 2.6e-197 692.2 438 75.3
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.3e-197 691.8 437 76.2
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 7.4e-197 690.6 438 74.4
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 7.4e-197 690.6 440 75.5
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 9.7e-197 690.3 429 76.2
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 1.7e-196 689.5 440 75.0
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.7e-196 689.5 441 76.0
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.8e-196 688.7 441 74.8
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 4.8e-196 688.0 440 75.7
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 6.3e-196 687.6 440 75.0
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 8.2e-196 687.2 437 75.3
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 1.1e-195 686.8 438 74.0
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.8e-195 686.0 441 74.8
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 3.1e-195 685.3 443 75.2
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 4.1e-195 684.9 438 73.5
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 2.0e-194 682.6 438 74.9
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 2.0e-194 682.6 441 75.3
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 2.0e-194 682.6 438 74.9
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 7.7e-194 680.6 440 74.8
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.7e-193 679.5 429 75.1
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 2.9e-193 678.7 437 72.8
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 6.5e-193 677.6 432 74.5
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 8.5e-193 677.2 440 74.5
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 8.5e-193 677.2 441 74.8
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.5e-192 676.4 438 73.7
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 1.5e-192 676.4 440 73.4
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.9e-192 676.0 435 74.0
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 2.5e-192 675.6 429 74.6
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 3.2e-192 675.2 441 74.6
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.2e-191 673.3 458 71.2
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 2.7e-191 672.2 444 73.4
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 4.7e-191 671.4 429 73.7
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 6.1e-191 671.0 425 75.8
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 8.8e-190 667.2 438 74.2
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.2e-189 666.8 440 73.0
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 3.3e-189 665.2 436 73.6
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 3.3e-189 665.2 425 76.0
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 5.7e-189 664.5 424 75.5
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.7e-188 662.9 429 73.4
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.7e-188 661.8 440 72.0
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 8.3e-188 660.6 439 70.8
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 8.3e-188 660.6 393 79.6
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.8e-187 659.4 438 71.7
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 5.3e-187 657.9 438 71.2
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.6e-186 656.4 422 75.8
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 2.9e-185 652.1 439 72.2
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 3.8e-185 651.7 441 71.7
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.9e-184 649.4 428 73.1
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.2e-183 646.7 442 72.4
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.2e-183 646.7 439 71.8
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 1.8e-182 642.9 417 72.9
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.8e-182 642.9 431 71.7
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.2e-181 640.2 422 72.3
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.7e-180 635.2 429 70.9
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 7.0e-179 630.9 415 72.3
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 3.5e-178 628.6 419 71.1
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 5.2e-174 614.8 452 68.6
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.5e-173 613.2 422 71.8
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 7.5e-173 610.9 429 67.1
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 3.1e-171 605.5 467 65.3
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 6.6e-169 597.8 398 72.9
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 2.5e-168 595.9 429 66.0
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.2e-167 593.6 441 63.0
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.6e-167 593.2 433 65.1
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.5e-165 586.6 496 60.9
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 3.2e-163 578.9 364 77.5
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 9.5e-160 567.4 478 59.0
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.6e-159 566.6 446 63.7
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 4.0e-158 562.0 375 72.8
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 4.1e-155 552.0 397 68.3
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 9.2e-155 550.8 540 54.6
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.2e-154 550.4 421 65.8
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 6.6e-153 544.7 484 58.9
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.1e-150 537.3 375 68.5
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 7.5e-149 531.2 437 62.0
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 3.9e-145 518.8 441 56.5
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 5.1e-145 518.5 442 57.7
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 1.4e-142 510.4 464 55.8
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.2e-141 507.3 438 59.8
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.5e-141 506.9 467 57.4
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 7.8e-138 494.6 436 55.3
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.2e-133 480.7 422 59.2
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.1e-130 469.9 431 53.4
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 2.0e-125 453.4 442 50.9
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 3.8e-116 422.5 409 51.6
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 5.5e-115 418.7 268 73.1
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 4.2e-107 392.5 244 77.9
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 3.0e-105 386.3 246 74.0
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.4e-94 350.9 385 45.7
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 9.1e-94 348.2 245 72.2
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 4.1e-86 322.8 444 40.1
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 4.1e-86 322.8 285 58.6
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 4.5e-85 319.3 194 76.3
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 2.2e-84 317.0 195 75.4
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 3.8e-84 316.2 502 36.1
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.3e-63 248.1 171 71.3
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.4e-57 228.0 192 59.9
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.7e-55 221.1 169 60.9
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 2.0e-48 197.6 234 47.4
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.7e-39 167.9 420 29.8
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 3.7e-39 166.8 132 61.4
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 1.4e-38 164.9 184 48.9
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 3.9e-36 156.8 195 45.6
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.2e-34 151.8 108 62.0
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 4.7e-34 149.8 91 73.6
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 8.1e-34 149.1 152 52.0
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 2.4e-30 137.5 125 56.0
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.0e-29 132.9 132 49.2
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 5.1e-28 129.8 132 52.3
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 2.5e-27 127.5 118 55.1
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 5.6e-27 126.3 105 59.0
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 3.4e-24 117.1 96 57.3
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 3.8e-23 113.6 86 59.3
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.4e-22 111.7 96 54.2
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 2.4e-22 110.9 126 48.4
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.3e-18 98.6 67 74.6
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 9.0e-17 92.4 66 62.1
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 4.2e-14 83.6 63 71.4
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.2e-13 82.0 71 59.2
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.1e-10 71.2 180 29.4
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 1.1e-09 68.9 82 46.3
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 4.0e-09 67.0 53 62.3
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 4.0e-09 67.0 53 62.3
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 4.0e-09 67.0 53 62.3
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 7.1e-06 56.2 40 65.0


User provided reference genes

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