Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.1e-108 395.2 274 100.0
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.7e-93 345.5 294 87.1
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.8e-92 343.2 294 86.7
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.0e-91 339.7 294 86.4
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 2.3e-87 326.2 294 84.7
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.3e-87 326.2 294 84.7
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 2.3e-79 299.7 294 78.9
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 5.1e-58 228.8 297 74.1
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.7e-45 187.2 281 69.0
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 2.9e-45 186.4 306 64.7
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 4.9e-45 185.7 290 63.4
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 6.4e-45 185.3 290 63.8
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 9.3e-44 181.4 305 64.6
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.0e-42 177.9 290 63.4
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 2.5e-41 173.3 285 66.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.3e-41 172.6 282 66.7
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 2.1e-40 170.2 287 65.2
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.1e-39 166.4 291 63.9
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 9.0e-39 164.9 283 64.7
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 1.3e-37 161.0 286 60.1
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.9e-37 159.8 292 64.7
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 2.9e-37 159.8 296 59.5
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 6.4e-37 158.7 289 61.9
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 8.4e-37 158.3 286 58.0
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.1e-36 157.9 293 61.4
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 2.4e-36 156.8 286 63.6
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 7.1e-36 155.2 299 52.5
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.9e-35 151.8 307 59.9
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.3e-34 151.0 197 50.3
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.8e-34 150.6 299 61.2
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 2.3e-34 150.2 291 60.8
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.1e-34 149.1 289 60.2
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 6.7e-34 148.7 295 60.7
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 6.7e-34 148.7 282 61.0
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 8.7e-34 148.3 269 52.4
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.7e-34 148.3 268 64.6
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-33 147.9 268 64.9
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 2.5e-33 146.7 290 60.3
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.3e-33 146.4 288 60.8
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.1e-32 143.7 288 61.5
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.8e-32 142.5 280 60.7
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 8.2e-32 141.7 264 62.5
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 8.2e-32 141.7 299 59.5
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.1e-31 141.4 301 58.1
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.4e-31 141.0 203 50.7
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.8e-31 140.6 299 59.2
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.8e-31 140.6 281 61.2
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 2.4e-31 140.2 279 45.5
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 4.0e-31 139.4 294 57.5
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 9.0e-31 138.3 291 58.4
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 9.0e-31 138.3 280 61.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.0e-30 137.1 200 51.5
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.6e-30 136.7 271 61.6
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 3.4e-30 136.3 288 59.4
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.4e-30 136.3 189 49.2
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.3e-29 134.4 269 61.0
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 2.2e-29 133.7 287 57.1
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 3.8e-29 132.9 285 58.2
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 6.5e-29 132.1 214 47.2
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 8.4e-29 131.7 293 57.7
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 8.4e-29 131.7 257 62.6
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.1e-28 131.3 212 46.2
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.4e-28 131.0 266 61.3
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.4e-28 131.0 266 61.3
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 4.2e-28 129.4 256 61.3
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.2e-28 129.4 286 57.7
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 9.3e-28 128.3 291 59.5
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.2e-27 127.9 278 59.7
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.1e-27 127.1 266 60.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.7e-27 126.7 288 58.3
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 6.0e-27 125.6 274 56.6
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 7.9e-27 125.2 280 58.9
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.3e-26 124.4 290 55.5
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.3e-26 123.6 286 57.7
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.0e-26 123.2 306 53.3
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 3.0e-26 123.2 294 56.1
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 5.1e-26 122.5 214 43.5
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 6.7e-26 122.1 288 54.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 6.7e-26 122.1 278 57.2
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 6.7e-26 122.1 304 56.2
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 8.7e-26 121.7 280 57.1
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 8.7e-26 121.7 270 60.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.1e-25 121.3 296 56.1
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.5e-25 120.9 290 55.5
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 3.3e-25 119.8 257 61.9
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.4e-25 118.6 300 54.7
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.3e-24 117.9 292 56.2
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 8.2e-24 115.2 274 46.4
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 8.2e-24 115.2 292 52.7
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.8e-23 114.0 290 54.8
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.4e-23 113.6 270 58.5
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.4e-23 113.6 301 53.8
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.1e-23 112.8 257 35.4
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.1e-23 112.8 284 54.9
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 4.1e-23 112.8 287 55.1
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.9e-23 112.1 180 46.1
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.5e-22 110.9 273 56.8
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.4e-22 109.8 287 54.7
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.9e-22 109.0 159 50.3
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.3e-21 107.8 305 53.1
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.1e-20 104.8 208 42.3
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.4e-20 104.4 287 55.4
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 5.5e-20 102.4 180 72.8
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 5.5e-20 102.4 274 52.9
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 9.3e-20 101.7 216 66.7
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 9.3e-20 101.7 204 42.6
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 1.2e-19 101.3 209 40.7
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.1e-19 100.5 170 74.1
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.7e-19 100.1 176 45.5
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 3.6e-19 99.8 302 52.0
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.6e-19 99.8 290 52.4
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.0e-18 98.2 184 44.6
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.3e-18 97.1 266 53.8
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.0e-18 96.7 272 53.3
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.1e-17 94.7 306 52.6
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 4.3e-17 92.8 303 48.5
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.3e-17 92.8 210 39.0
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.7e-16 89.7 272 52.2
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 4.8e-16 89.4 292 48.6
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 6.3e-16 89.0 179 66.5
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.4e-15 87.8 290 50.0
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 1.4e-15 87.8 295 50.2
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.4e-15 87.8 311 50.8
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.4e-15 87.8 276 50.0
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.8e-15 87.4 280 42.1
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 5.3e-15 85.9 290 49.3
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 5.3e-15 85.9 284 47.9
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 6.9e-15 85.5 275 51.6
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.9e-15 85.5 286 39.9
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.9e-15 85.5 286 39.9
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 6.9e-15 85.5 272 52.6
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.2e-14 84.7 284 46.8
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.5e-14 84.3 284 46.8
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.5e-14 84.3 251 44.6
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.0e-14 84.0 278 50.0
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.5e-14 82.8 309 35.6
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 7.7e-14 82.0 101 56.4
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.0e-13 81.6 130 47.7
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 1.3e-13 81.3 291 49.1
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 1.3e-13 81.3 291 49.1
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 1.3e-13 81.3 291 49.1
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.3e-13 81.3 121 87.6
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.7e-13 80.9 275 50.5
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 6.5e-13 79.0 278 47.8
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 6.5e-13 79.0 195 33.3
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 8.5e-13 78.6 261 52.9
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.4e-12 77.8 161 44.7
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.4e-12 77.8 288 49.3
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.9e-12 77.4 281 50.9
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 3.2e-12 76.6 163 44.2
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 7.2e-12 75.5 284 46.8
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 9.4e-12 75.1 276 50.4
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 1.2e-11 74.7 274 48.9
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.1e-11 73.9 281 50.2
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 3.6e-11 73.2 277 37.9
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 3.9e-10 69.7 265 47.5
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 3.3e-09 66.6 287 50.9
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 5.7e-09 65.9 38 81.6
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 9.7e-09 65.1 220 38.6
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.2e-08 63.9 290 44.8
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.4e-07 61.2 194 33.0
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 1.5e-06 57.8 140 71.4
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 4.5e-06 56.2 38 68.4


User provided reference genes

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