Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.7e-291 1004.6 508 100.0
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.3e-280 969.1 508 96.7
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.6e-267 924.5 539 89.4
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 6.6e-261 903.7 509 89.8
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 4.0e-258 894.4 518 89.8
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 3.4e-233 811.6 511 80.0
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 1.4e-223 779.6 511 77.1
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 5.4e-223 777.7 511 77.1
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 2.4e-210 735.7 511 69.9
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 6.9e-210 734.2 525 70.3
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 1.5e-209 733.0 510 70.6
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 1.3e-203 713.4 522 69.0
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 3.7e-203 711.8 511 69.9
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 2.9e-200 702.2 373 97.1
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 8.4e-200 700.7 552 63.9
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 7.1e-199 697.6 511 69.1
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.1e-199 697.6 512 69.5
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 1.6e-190 669.8 511 65.6
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 1.4e-189 666.8 511 64.6
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 3.0e-189 665.6 511 64.8
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 5.7e-188 661.4 511 64.4
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 1.8e-186 656.4 514 64.0
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 1.8e-186 656.4 514 66.0
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 6.9e-186 654.4 511 64.0
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 1.2e-185 653.7 529 64.1
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 1.5e-185 653.3 514 63.6
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.0e-185 652.9 511 63.8
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 4.5e-185 651.7 511 64.4
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 3.8e-184 648.7 511 62.4
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 3.8e-184 648.7 512 62.7
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 1.1e-183 647.1 511 63.8
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 1.4e-183 646.7 511 63.6
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 3.2e-183 645.6 510 62.9
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 1.6e-182 643.3 511 64.2
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 2.7e-182 642.5 511 65.0
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 4.7e-182 641.7 508 62.0
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 3.0e-181 639.0 510 62.5
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 3.0e-181 639.0 511 63.4
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 5.1e-181 638.3 511 62.0
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 1.5e-180 636.7 549 61.0
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 9.7e-180 634.0 510 61.0
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 1.7e-179 633.3 512 63.1
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 4.8e-179 631.7 511 63.4
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 6.3e-179 631.3 515 63.1
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 2.4e-178 629.4 513 63.4
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 5.3e-178 628.2 512 62.7
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 5.3e-178 628.2 511 64.6
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 1.2e-177 627.1 515 62.3
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 1.5e-177 626.7 511 61.1
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 7.7e-177 624.4 510 62.7
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 3.8e-176 622.1 510 62.5
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 5.0e-176 621.7 513 62.0
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 7.2e-175 617.8 510 62.2
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 2.1e-174 616.3 512 61.7
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 3.0e-173 612.5 511 62.6
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 6.7e-173 611.3 515 60.0
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 7.4e-172 607.8 509 59.7
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 1.3e-171 607.1 509 60.1
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 1.3e-171 607.1 509 61.3
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 2.2e-171 606.3 483 62.7
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 1.1e-170 604.0 513 60.8
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 4.1e-170 602.1 511 60.1
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 3.5e-169 599.0 551 57.2
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 4.5e-169 598.6 511 58.5
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 7.7e-169 597.8 509 59.9
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 1.3e-168 597.0 516 60.7
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 1.7e-168 596.7 511 59.3
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 5.0e-168 595.1 511 60.7
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 6.5e-168 594.7 511 60.1
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 1.9e-167 593.2 513 59.3
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 4.2e-167 592.0 515 59.2
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 5.5e-167 591.7 511 58.7
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 2.1e-166 589.7 513 58.5
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 2.1e-166 589.7 521 59.5
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 5.2e-165 585.1 495 60.2
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 8.8e-165 584.3 508 59.8
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 8.8e-165 584.3 508 59.8
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 1.5e-164 583.6 503 58.3
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 2.0e-164 583.2 513 58.5
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 4.4e-164 582.0 508 59.4
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 6.3e-163 578.2 511 59.3
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 1.4e-162 577.0 495 60.6
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 3.5e-161 572.4 510 58.2
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 5.9e-161 571.6 581 52.8
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 8.5e-160 567.8 461 64.9
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 2.7e-158 562.8 426 68.3
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 3.6e-158 562.4 437 65.9
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 5.2e-157 558.5 460 62.4
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 1.2e-156 557.4 478 60.3
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 5.9e-153 545.0 530 56.2
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 1.0e-152 544.3 514 54.3
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 8.9e-149 531.2 453 60.7
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.7e-147 526.9 591 49.9
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 4.9e-147 525.4 531 52.5
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 3.4e-140 502.7 508 53.1
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 7.0e-130 468.4 469 52.0
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 3.5e-129 466.1 464 55.0
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 2.2e-123 446.8 524 46.6
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 1.2e-118 431.0 387 57.4
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 1.7e-112 410.6 515 43.9
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 7.3e-111 405.2 340 60.9
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 4.9e-99 365.9 529 39.9
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 6.4e-99 365.5 319 60.5
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 7.1e-98 362.1 386 50.8
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 2.4e-93 347.1 325 56.0
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 2.4e-93 347.1 429 49.2
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 1.2e-89 334.7 456 44.5
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 8.4e-83 312.0 341 48.4
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 1.6e-78 297.7 196 75.0
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 2.4e-77 293.9 260 60.4
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 2.6e-76 290.4 317 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 9.1e-69 265.4 453 38.0
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 5.5e-66 256.1 433 40.4
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 1.7e-59 234.6 388 40.2
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.5e-58 230.7 186 61.8
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 2.6e-55 220.7 539 32.1
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 7.7e-52 209.1 356 38.5
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 1.0e-51 208.8 135 74.1
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.2e-44 185.3 132 72.7
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.2e-44 185.3 132 72.7
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 1.9e-42 177.9 136 62.5
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 6.6e-27 126.3 504 26.8
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.1e-26 125.6 192 40.6
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 5.8e-23 113.2 60 85.0
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.6e-20 105.1 57 80.7
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 4.6e-20 103.6 116 45.7
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.5e-18 97.8 53 83.0
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 2.1e-17 94.7 63 65.1
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 2.3e-16 91.3 223 33.6
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 3.1e-16 90.9 62 69.4
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 3.1e-16 90.9 62 69.4
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.9e-14 83.6 65 61.5
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 7.8e-12 76.3 65 53.8
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 6.2e-09 66.6 146 32.2


User provided reference genes

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