Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1747.6 892 100.0
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1574.7 888 92.1
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 0.0e+00 1445.6 850 88.8
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 0.0e+00 1178.7 907 73.0
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1171.0 677 91.6
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1092.4 903 69.7
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1090.9 886 70.5
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 0.0e+00 1088.2 904 68.6
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 6.7e-200 701.8 904 49.2
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.5e-196 690.6 897 50.5
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.6e-174 617.5 823 46.3
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 1.6e-169 600.9 409 76.0
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 3.1e-165 586.6 840 41.5
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 2.0e-164 583.9 867 42.8
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 3.8e-163 579.7 874 41.1
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 7.4e-159 565.5 866 44.5
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 1.3e-158 564.7 822 43.2
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.0e-155 555.1 901 42.1
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.1e-154 551.6 798 45.0
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.1e-153 547.4 802 42.3
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.0e-152 545.0 805 41.7
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 7.5e-151 538.9 820 40.9
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.2e-148 531.6 842 39.1
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.6e-148 531.2 794 42.7
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 2.1e-145 520.8 802 40.3
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 7.5e-143 512.3 814 40.9
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 2.8e-142 510.4 811 42.5
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 4.8e-142 509.6 811 41.9
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 9.1e-141 505.4 806 39.0
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 9.1e-141 505.4 794 39.7
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.2e-140 505.0 792 40.8
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.0e-140 504.2 847 37.9
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 2.7e-140 503.8 821 37.4
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 4.5e-140 503.1 798 40.6
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 2.5e-138 497.3 793 39.2
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 1.2e-137 495.0 788 39.8
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.6e-137 494.6 274 90.1
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 2.3e-136 490.7 804 38.2
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.4e-135 486.9 889 39.0
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 2.8e-134 483.8 799 37.4
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.7e-134 483.4 805 39.1
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 2.9e-131 473.8 895 36.6
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 5.0e-131 473.0 894 38.7
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 6.6e-131 472.6 795 38.5
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.1e-130 471.9 874 39.5
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.9e-130 471.1 983 34.7
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 1.2e-129 468.4 808 38.5
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.8e-129 467.2 549 57.2
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 3.6e-129 466.8 837 36.3
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 4.7e-129 466.5 820 37.8
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 4.7e-129 466.5 806 38.1
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 4.7e-129 466.5 820 37.8
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 1.8e-128 464.5 802 37.4
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.8e-128 464.5 898 38.1
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 4.0e-128 463.4 802 37.0
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 6.8e-128 462.6 830 36.3
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 6.8e-128 462.6 830 36.3
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 8.9e-128 462.2 802 37.7
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.5e-127 461.5 807 38.9
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 2.6e-127 460.7 802 37.7
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 7.5e-127 459.1 804 36.9
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 7.5e-127 459.1 798 36.8
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 2.2e-126 457.6 804 35.9
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 2.9e-126 457.2 925 36.2
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 3.7e-126 456.8 801 36.8
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.8e-125 454.5 906 36.1
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 7.0e-125 452.6 993 33.2
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 1.2e-124 451.8 822 34.9
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.0e-124 451.1 860 36.6
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 2.7e-124 450.7 823 36.0
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 3.5e-124 450.3 798 37.0
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.5e-124 450.3 825 35.4
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 3.5e-124 450.3 778 37.9
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 4.6e-124 449.9 806 37.7
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.3e-123 448.4 800 36.1
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 3.0e-123 447.2 829 36.7
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.9e-123 446.8 792 36.0
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 5.0e-123 446.4 834 36.7
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 6.6e-123 446.0 810 37.2
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 4.3e-122 443.4 833 36.4
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 5.6e-122 443.0 901 36.5
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 6.2e-121 439.5 802 36.2
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 1.1e-120 438.7 867 35.4
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.8e-120 438.0 1021 32.4
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.3e-120 437.6 849 37.8
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 8.9e-120 435.6 883 35.3
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 4.9e-118 429.9 856 35.3
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 6.0e-116 422.9 855 35.2
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.0e-115 420.6 811 34.8
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 2.5e-114 417.5 870 34.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 4.0e-112 410.2 362 67.1
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 5.8e-111 406.4 822 35.8
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.7e-110 404.8 796 34.3
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.4e-109 401.7 820 38.3
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 1.9e-109 401.4 822 33.2
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 3.5e-108 397.1 734 39.9
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 6.0e-108 396.4 747 39.5
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.3e-107 395.2 687 36.2
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 7.3e-106 389.4 856 34.0
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 4.7e-105 386.7 883 32.7
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-103 382.1 809 33.9
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.4e-101 375.2 1008 29.7
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 3.5e-100 370.5 824 37.0
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 5.1e-99 366.7 476 45.2
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 2.0e-95 354.8 789 33.6
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 7.8e-92 342.8 375 49.3
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 6.6e-91 339.7 437 44.9
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 1.3e-89 335.5 779 31.6
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 7.6e-79 299.7 808 33.0
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 3.0e-75 287.7 276 50.0
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 9.6e-74 282.7 540 37.6
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.8e-72 278.5 803 27.3
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 7.6e-71 273.1 810 29.9
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.1e-66 259.2 250 52.8
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 2.0e-58 231.9 673 32.7
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 9.1e-56 223.0 268 44.4
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 3.9e-51 207.6 371 41.8
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.3e-49 202.6 253 44.3
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 1.7e-49 202.2 256 42.6
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 4.1e-40 171.0 133 59.4
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.6e-39 169.1 132 62.1
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 4.7e-36 157.5 178 40.4
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.1e-29 136.3 232 35.8
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.3e-27 128.6 88 63.6
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 5.2e-27 127.5 234 39.3
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.6e-26 125.2 213 37.1
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.4e-26 124.4 447 28.4
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.5e-26 123.6 86 64.0
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 9.8e-26 123.2 86 62.8
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 5.5e-21 107.5 101 52.5
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.2e-20 106.3 69 59.4
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.2e-18 99.8 174 40.2
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 2.9e-14 85.1 147 36.1
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 1.1e-13 83.2 49 81.6
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.4e-11 76.3 69 50.7
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.8e-11 75.9 189 31.7
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 6.8e-11 73.9 178 36.0
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 3.2e-08 65.1 143 31.5
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 3.2e-08 65.1 32 75.0
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.2e-08 65.1 84 45.2


User provided reference genes

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