Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 4.7e-40 167.9 120 100.0
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.0e-36 154.1 120 85.0
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.5e-35 151.8 120 94.2
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 1.0e-34 150.2 120 93.3
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.0e-31 140.2 77 93.5
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 3.9e-31 138.3 120 64.2
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 6.7e-31 137.5 120 65.8
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 1.1e-30 136.7 120 88.3
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 8.2e-29 130.6 77 90.9
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 2.4e-28 129.0 119 58.8
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 3.1e-28 128.6 119 58.0
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 2.6e-27 125.6 111 61.3
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 2.6e-27 125.6 116 60.3
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 7.7e-27 124.0 112 60.7
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 1.7e-26 122.9 114 59.6
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 3.8e-26 121.7 118 59.3
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 3.8e-26 121.7 118 59.3
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 3.8e-26 121.7 119 58.8
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 5.0e-26 121.3 113 59.3
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 5.0e-26 121.3 76 80.3
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 6.5e-26 120.9 114 58.8
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 6.5e-26 120.9 114 58.8
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 6.5e-26 120.9 116 58.6
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 6.5e-26 120.9 118 59.3
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 8.5e-26 120.6 116 56.0
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 1.5e-25 119.8 113 59.3
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.9e-25 119.4 116 56.9
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.9e-25 119.4 116 56.9
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 1.9e-25 119.4 124 56.5
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 2.5e-25 119.0 122 57.4
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 2.5e-25 119.0 75 80.0
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 3.2e-25 118.6 119 56.3
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 3.2e-25 118.6 119 58.0
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 4.2e-25 118.2 118 55.9
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 5.5e-25 117.9 75 76.0
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 5.5e-25 117.9 118 56.8
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 7.2e-25 117.5 113 57.5
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 7.2e-25 117.5 107 59.8
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 7.2e-25 117.5 117 55.6
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 9.4e-25 117.1 107 57.9
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 9.4e-25 117.1 121 56.2
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 9.4e-25 117.1 121 56.2
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 9.4e-25 117.1 115 57.4
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 1.2e-24 116.7 118 55.9
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 1.2e-24 116.7 117 57.3
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.6e-24 116.3 75 77.3
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 2.1e-24 115.9 111 57.7
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 2.1e-24 115.9 75 76.0
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 2.7e-24 115.5 110 57.3
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 2.7e-24 115.5 79 75.9
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 2.7e-24 115.5 119 71.4
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 4.7e-24 114.8 75 76.0
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 4.7e-24 114.8 116 55.2
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 6.1e-24 114.4 119 70.6
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 1.0e-23 113.6 79 77.2
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.8e-23 112.8 113 55.8
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 1.8e-23 112.8 123 70.7
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 3.0e-23 112.1 111 55.9
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 4.0e-23 111.7 74 77.0
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 4.0e-23 111.7 69 81.2
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 6.7e-23 110.9 76 72.4
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 8.8e-23 110.5 113 54.0
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 2.0e-22 109.4 83 68.7
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 4.4e-22 108.2 116 54.3
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 4.4e-22 108.2 76 73.7
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 4.4e-22 108.2 118 53.4
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 5.7e-22 107.8 75 72.0
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 7.5e-22 107.5 80 72.5
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 9.7e-22 107.1 119 69.7
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 9.7e-22 107.1 54 98.1
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 9.7e-22 107.1 54 98.1
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 9.7e-22 107.1 115 68.7
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 9.7e-22 107.1 116 52.6
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 9.7e-22 107.1 111 54.1
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 1.3e-21 106.7 84 67.9
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.7e-21 106.3 75 73.3
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.7e-21 106.3 75 73.3
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 1.7e-21 106.3 111 54.1
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 2.2e-21 105.9 76 71.1
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 2.8e-21 105.5 75 70.7
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 3.7e-21 105.1 115 60.9
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 4.8e-21 104.8 84 67.9
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 4.8e-21 104.8 115 51.3
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 4.8e-21 104.8 73 72.6
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 6.3e-21 104.4 117 51.3
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 8.3e-21 104.0 107 74.8
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 8.3e-21 104.0 107 74.8
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 1.1e-20 103.6 113 53.1
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 1.4e-20 103.2 73 72.6
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 1.4e-20 103.2 71 76.1
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 1.8e-20 102.8 115 53.0
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 4.1e-20 101.7 107 73.8
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 5.3e-20 101.3 73 67.1
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 1.2e-19 100.1 73 67.1
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 1.2e-19 100.1 107 73.8
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.2e-19 100.1 107 73.8
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 1.2e-19 100.1 107 74.8
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 1.6e-19 99.8 103 75.7
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 1.6e-19 99.8 108 50.0
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 2.0e-19 99.4 75 66.7
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 2.0e-19 99.4 79 69.6
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 2.7e-19 99.0 79 67.1
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 2.7e-19 99.0 73 65.8
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 2.7e-19 99.0 69 69.6
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 3.5e-19 98.6 77 67.5
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 1.7e-18 96.3 69 68.1
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 1.7e-18 96.3 69 68.1
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 1.7e-18 96.3 75 69.3
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 2.2e-18 95.9 75 66.7
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 2.9e-18 95.5 69 66.7
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 1.9e-17 92.8 58 75.9
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 7.2e-17 90.9 119 42.9
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 3.6e-16 88.6 76 59.2
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 1.0e-15 87.0 96 69.8
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 1.5e-14 83.2 79 59.5
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 1.7e-13 79.7 69 52.2
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 3.1e-12 75.5 70 64.3
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 7.0e-12 74.3 104 52.9
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 1.7e-10 69.7 43 79.1
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 2.3e-10 69.3 68 48.5
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 2.9e-10 68.9 77 50.6
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 1.9e-09 66.2 75 50.7
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.3e-09 65.5 77 48.1
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.3e-09 65.5 77 48.1
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 5.5e-09 64.7 75 49.3
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 8.0e-08 60.8 67 44.8
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 1.2e-06 57.0 36 72.2
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 2.0e-06 56.2 52 48.1


User provided reference genes

Program Settings