Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 8.4e-63 243.4 115 100.0
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 9.6e-51 203.4 112 88.4
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 2.8e-50 201.8 110 89.1
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.8e-50 201.8 110 89.1
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.8e-50 201.8 110 89.1
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 2.7e-45 185.3 110 83.6
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 1.8e-36 156.0 110 70.9
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 1.8e-36 156.0 112 71.4
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 8.7e-36 153.7 106 73.6
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 8.7e-36 153.7 119 68.1
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 2.5e-35 152.1 109 72.5
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 3.3e-35 151.8 114 68.4
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 6.2e-34 147.5 106 69.8
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 6.2e-34 147.5 106 69.8
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 4.0e-33 144.8 114 64.0
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 5.3e-33 144.4 102 71.6
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 5.3e-33 144.4 96 71.9
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 6.9e-33 144.1 104 72.1
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 5.8e-32 141.0 99 71.7
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 7.6e-32 140.6 103 66.0
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 7.6e-32 140.6 106 65.1
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 1.7e-31 139.4 102 67.6
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 1.7e-31 139.4 102 67.6
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 2.9e-31 138.7 101 65.3
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 2.9e-31 138.7 110 62.7
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 3.8e-31 138.3 67 89.6
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 4.9e-31 137.9 104 67.3
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.1e-30 136.7 102 65.7
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.4e-30 136.3 105 61.0
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 1.9e-30 136.0 111 62.2
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 1.9e-30 136.0 107 57.9
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.2e-30 135.2 95 67.4
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 3.2e-30 135.2 98 70.4
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 3.2e-30 135.2 103 64.1
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 4.2e-30 134.8 102 66.7
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 5.5e-30 134.4 112 60.7
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 7.1e-30 134.0 101 65.3
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 9.3e-30 133.7 103 63.1
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.2e-29 133.3 97 62.9
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 1.6e-29 132.9 98 67.3
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 1.6e-29 132.9 112 59.8
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 1.6e-29 132.9 97 62.9
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.1e-29 132.5 103 65.0
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 2.7e-29 132.1 102 62.7
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 2.7e-29 132.1 104 63.5
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 2.7e-29 132.1 109 61.5
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.7e-29 132.1 113 59.3
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 3.5e-29 131.7 114 63.2
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 6.0e-29 131.0 105 64.8
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 6.0e-29 131.0 103 63.1
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 6.0e-29 131.0 95 64.2
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 7.9e-29 130.6 104 61.5
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 7.9e-29 130.6 96 63.5
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.0e-28 130.2 103 60.2
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.3e-28 129.8 108 60.2
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 1.8e-28 129.4 103 62.1
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 2.3e-28 129.0 103 62.1
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 2.3e-28 129.0 96 63.5
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.3e-28 129.0 105 62.9
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 3.0e-28 128.6 108 59.3
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 3.9e-28 128.3 99 58.6
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.9e-28 128.3 107 64.5
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 3.9e-28 128.3 105 60.0
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 5.1e-28 127.9 107 64.5
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 6.7e-28 127.5 75 76.0
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 6.7e-28 127.5 113 59.3
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 8.7e-28 127.1 96 59.4
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 8.7e-28 127.1 94 59.6
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 1.1e-27 126.7 105 59.0
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 1.1e-27 126.7 102 64.7
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 1.1e-27 126.7 101 61.4
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 1.5e-27 126.3 76 73.7
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.5e-27 126.3 79 72.2
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 1.9e-27 125.9 82 72.0
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 2.5e-27 125.6 102 60.8
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 3.3e-27 125.2 97 62.9
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 4.3e-27 124.8 100 63.0
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 4.3e-27 124.8 78 70.5
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 5.7e-27 124.4 76 73.7
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 5.7e-27 124.4 56 92.9
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 7.4e-27 124.0 76 72.4
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 7.4e-27 124.0 76 72.4
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 9.6e-27 123.6 76 72.4
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 9.6e-27 123.6 76 72.4
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 9.6e-27 123.6 76 72.4
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 9.6e-27 123.6 106 58.5
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 9.6e-27 123.6 103 59.2
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 1.6e-26 122.9 103 60.2
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 1.6e-26 122.9 93 62.4
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 2.1e-26 122.5 81 67.9
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.8e-26 122.1 106 56.6
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 2.8e-26 122.1 107 60.7
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 3.7e-26 121.7 107 59.8
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.7e-26 121.7 107 57.0
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 4.8e-26 121.3 107 56.1
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 6.3e-26 120.9 66 86.4
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 6.3e-26 120.9 93 62.4
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 6.3e-26 120.9 93 62.4
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 8.2e-26 120.6 100 60.0
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.8e-25 119.4 102 55.9
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 4.1e-25 118.2 69 78.3
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 5.3e-25 117.9 73 75.3
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 5.3e-25 117.9 66 81.8
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 6.9e-25 117.5 54 90.7
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 3.4e-24 115.2 106 57.5
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 4.5e-24 114.8 101 57.4
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 5.9e-24 114.4 96 59.4
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 1.7e-23 112.8 52 92.3
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 1.7e-23 112.8 100 52.0
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 2.9e-23 112.1 110 57.3
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 5.0e-23 111.3 108 55.6
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 1.6e-21 106.3 84 61.9
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 1.6e-21 106.3 82 63.4
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 3.9e-20 101.7 107 50.5
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 1.5e-19 99.8 99 46.5
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 2.5e-19 99.0 50 78.0
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 2.5e-19 99.0 50 76.0
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 3.3e-19 98.6 43 93.0
HanXRQChr14g0434751 Helianthus annuus HOM05D003440 ORTHO05D003953 4.3e-19 98.2 81 58.0
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 5.7e-19 97.8 106 50.9
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 7.7e-16 87.4 72 56.9
Prupe.1G131400 Prunus persica HOM05D003440 ORTHO05D003953 9.4e-14 80.5 47 76.6
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 6.1e-13 77.8 94 42.6
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 7.9e-13 77.4 83 43.4
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 7.9e-13 77.4 83 43.4
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 7.9e-13 77.4 83 43.4
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 2.3e-12 75.9 69 49.3
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 3.0e-12 75.5 58 51.7
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 6.7e-12 74.3 111 35.1
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 8.8e-12 73.9 84 39.3
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.1e-11 73.6 65 46.2
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 5.7e-11 71.2 94 38.3
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 7.4e-11 70.9 63 49.2
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 9.7e-11 70.5 100 37.0
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 9.7e-11 70.5 51 54.9
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 1.3e-10 70.1 99 39.4
Pp3c7_16400 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.7e-10 69.7 53 52.8
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 1.7e-10 69.7 51 54.9
Pp3c6_18540 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.2e-10 69.3 48 56.2
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 2.8e-10 68.9 62 43.5
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.8e-10 68.9 55 52.7
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 3.7e-10 68.6 52 51.9
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 4.8e-10 68.2 55 49.1
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 6.3e-10 67.8 52 51.9
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 8.2e-10 67.4 107 29.9
Mapoly0005s0064 Marchantia polymorpha HOM05D003440 ORTHO05D003953 8.2e-10 67.4 52 57.7
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 8.2e-10 67.4 51 52.9
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 8.2e-10 67.4 53 49.1
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.1e-09 67.0 105 33.3
Pp3c5_6640 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.1e-09 67.0 47 55.3
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 1.4e-09 66.6 52 48.1
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.4e-09 66.6 109 34.9
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.8e-09 66.2 53 50.9
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 2.4e-09 65.9 53 47.2
Pp3c13_1650 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.4e-09 65.9 52 51.9
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 3.1e-09 65.5 50 50.0
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 3.1e-09 65.5 53 47.2
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 4.1e-09 65.1 55 47.3
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 4.1e-09 65.1 54 44.4
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 5.3e-09 64.7 50 56.0
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 5.3e-09 64.7 101 33.7
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 5.3e-09 64.7 52 53.8
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 5.3e-09 64.7 52 53.8
Pp3c3_1170 Physcomitrium patens HOM05D003440 ORTHO05D003953 9.1e-09 63.9 52 50.0
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.2e-08 63.5 54 46.3
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 2.0e-08 62.8 103 31.1
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 2.6e-08 62.4 54 48.1
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 4.5e-08 61.6 101 33.7
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 7.7e-08 60.8 58 41.4
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 1.0e-07 60.5 106 31.1
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 1.3e-07 60.1 53 49.1
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 2.9e-07 58.9 103 37.9
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 3.8e-07 58.5 101 29.7
Manes.08G166301 Manihot esculenta HOM05D003440 ORTHO05D003953 3.8e-07 58.5 76 35.5
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 8.5e-07 57.4 48 47.9
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 8.5e-07 57.4 45 48.9
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.1e-06 57.0 50 42.0
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 2.5e-06 55.8 50 40.0
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.2e-06 55.5 96 34.4
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 5.5e-06 54.7 69 34.8
SMO331G0005 Selaginella moellendorffii HOM05D003440 ORTHO05D003953 9.4e-06 53.9 58 43.1


User provided reference genes

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