Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 0.0e+00 1114.8 634 100.0
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.0e-279 966.5 634 90.2
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 1.4e-175 620.5 614 65.6
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 9.0e-175 617.8 614 65.0
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 5.3e-143 512.3 620 57.3
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 8.0e-99 365.5 543 47.3
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 1.4e-90 338.2 344 61.0
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 8.6e-85 318.9 609 43.8
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 4.3e-68 263.5 614 36.6
FAN02G2871 Fragaria x ananassa HOM05D005710 ORTHO05D004657 9.9e-65 252.3 136 93.4
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 1.2e-62 245.4 377 47.7
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 3.0e-61 240.7 404 42.8
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 3.9e-61 240.4 279 51.6
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 2.5e-60 237.7 397 41.6
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 4.3e-60 236.9 629 37.5
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 7.3e-60 236.1 380 45.5
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 4.5e-57 226.9 441 39.5
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 6.4e-56 223.0 351 47.3
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 3.2e-55 220.7 375 44.0
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 2.1e-54 218.0 412 42.0
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 6.0e-54 216.5 374 42.8
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 1.3e-53 215.3 345 44.9
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 7.4e-52 209.5 330 43.9
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 7.4e-52 209.5 368 42.1
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.6e-51 208.4 376 42.0
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 4.8e-51 206.8 370 43.8
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 6.2e-51 206.5 376 42.3
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 4.5e-49 200.3 384 41.4
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 3.2e-47 194.1 382 40.1
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 1.6e-46 191.8 388 40.2
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 2.7e-46 191.0 300 45.0
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 2.7e-46 191.0 334 41.3
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 4.6e-46 190.3 300 45.0
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 1.0e-45 189.1 268 50.0
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 2.3e-45 188.0 393 40.7
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 3.9e-45 187.2 337 44.8
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 5.1e-45 186.8 277 46.9
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 5.1e-45 186.8 614 31.9
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 6.7e-45 186.4 270 45.6
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 1.9e-44 184.9 286 46.5
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 4.3e-44 183.7 343 40.2
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 9.6e-44 182.6 610 31.3
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 9.6e-44 182.6 287 45.3
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 6.3e-43 179.9 274 44.5
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 1.4e-42 178.7 315 41.6
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.8e-42 178.3 277 42.6
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 5.3e-42 176.8 264 47.3
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 5.3e-42 176.8 406 37.2
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 5.3e-42 176.8 374 37.2
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 3.4e-41 174.1 417 40.3
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 4.5e-41 173.7 283 45.2
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 2.2e-40 171.4 352 38.1
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 3.8e-40 170.6 286 44.1
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 5.0e-40 170.2 283 44.9
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 5.0e-40 170.2 279 44.8
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.4e-39 168.7 414 35.5
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 1.9e-39 168.3 270 44.8
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.9e-39 168.3 485 34.0
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 3.2e-39 167.5 548 31.8
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 3.2e-39 167.5 336 41.4
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 5.5e-39 166.8 536 31.3
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 5.5e-39 166.8 285 43.9
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 7.2e-39 166.4 366 38.3
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 1.3e-37 162.2 391 37.6
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 3.9e-37 160.6 381 35.2
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 6.7e-37 159.8 547 29.6
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 6.7e-37 159.8 321 38.0
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 1.1e-36 159.1 182 51.6
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 1.1e-36 159.1 614 29.2
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 1.9e-36 158.3 263 46.0
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.9e-36 158.3 330 39.4
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 2.5e-36 157.9 335 38.2
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 7.4e-36 156.4 265 39.6
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 1.6e-35 155.2 277 43.3
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 3.7e-35 154.1 255 40.4
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 4.8e-35 153.7 246 45.5
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 4.8e-35 153.7 261 42.9
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 1.4e-34 152.1 340 37.1
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 4.1e-34 150.6 344 36.6
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 5.3e-34 150.2 262 40.1
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 3.4e-33 147.5 240 47.1
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 5.9e-33 146.7 414 34.3
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 5.9e-33 146.7 414 34.3
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 5.9e-33 146.7 345 37.4
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 1.0e-32 146.0 271 39.9
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 1.3e-32 145.6 347 36.3
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 1.3e-32 145.6 347 36.3
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 1.7e-32 145.2 246 40.2
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 2.2e-32 144.8 347 36.6
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 2.2e-32 144.8 259 41.7
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 6.5e-32 143.3 319 39.2
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.9e-31 141.7 347 36.3
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 2.5e-31 141.4 307 39.1
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 1.6e-30 138.7 234 40.6
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 2.1e-30 138.3 342 34.8
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 2.3e-29 134.8 453 30.9
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 6.7e-29 133.3 277 35.4
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 4.3e-28 130.6 465 32.7
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 9.7e-28 129.4 144 53.5
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 4.1e-26 124.0 329 35.9
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 4.1e-26 124.0 329 35.9
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 1.2e-25 122.5 285 35.4
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 1.2e-25 122.5 285 35.4
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 3.8e-24 117.5 366 33.1
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 8.5e-24 116.3 279 34.4
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 3.6e-22 110.9 125 48.8
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 6.1e-22 110.2 242 40.5
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 7.9e-22 109.8 408 31.6
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 3.3e-20 104.4 131 51.1
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 4.4e-20 104.0 100 53.0
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 9.7e-20 102.8 152 43.4
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 3.7e-19 100.9 182 36.8
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 3.8e-16 90.9 269 29.7
TAR371G0637 Trochodendron aralioides HOM05D005710 ORTHO05D004657 1.9e-15 88.6 142 43.0
Nn4g23370 Nelumbo nucifera HOM05D005710 ORTHO05D004657 1.1e-12 79.3 204 34.8
SalBow3G1747 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.1e-12 79.3 227 30.4
Lj4P116T76 Lonicera japonica HOM05D005710 ORTHO05D004657 7.5e-12 76.6 156 40.4
Migut.K01288 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.3e-11 75.9 255 28.2
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 6.3e-11 73.6 120 39.2
GSVIVG01011503001 Vitis vinifera HOM05D005710 ORTHO05D004657 7.0e-10 70.1 69 49.3
Ca_06819_v3 Cicer arietinum L. HOM05D005710 ORTHO05D004657 9.1e-10 69.7 243 31.3
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 2.0e-09 68.6 152 39.5
Oeu033388.1 Olea europaea HOM05D005710 ORTHO05D004657 2.2e-08 65.1 179 33.0
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.8e-08 64.3 162 28.4
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 6.5e-08 63.5 101 36.6
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 8.5e-08 63.2 104 37.5
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 1.5e-07 62.4 104 37.5
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 1.5e-07 62.4 104 37.5
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 1.9e-07 62.0 104 36.5
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 1.9e-07 62.0 104 36.5
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 1.9e-07 62.0 104 36.5
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 1.9e-07 62.0 104 36.5
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 1.9e-07 62.0 104 36.5
Aa31LG1G27630 Aethionema arabicum HOM05D006269 ORTHO05D001487 2.5e-07 61.6 194 28.9
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 2.5e-07 61.6 101 35.6
Oeu000861.1 Olea europaea HOM05D005710 ORTHO05D004657 3.2e-07 61.2 111 39.6
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 4.2e-07 60.8 101 33.7
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 4.2e-07 60.8 122 33.6
Potri.004G124301 Populus trichocarpa HOM05D005710 ORTHO05D004657 4.2e-07 60.8 60 48.3
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 4.2e-07 60.8 101 34.7
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.5e-07 60.5 99 35.4
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 9.4e-07 59.7 101 33.7
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 9.4e-07 59.7 101 33.7
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 1.2e-06 59.3 125 33.6
FAN06G2203 Fragaria x ananassa HOM05D006269 ORTHO05D001487 1.2e-06 59.3 129 32.6
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 1.2e-06 59.3 99 35.4
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 1.2e-06 59.3 132 30.3
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 1.6e-06 58.9 101 34.7
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 1.6e-06 58.9 99 34.3
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.6e-06 58.9 99 34.3
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.6e-06 58.9 99 34.3
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.6e-06 58.9 99 34.3
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 1.6e-06 58.9 99 36.4
Medtr8g028265 Medicago truncatula HOM05D006269 ORTHO05D001487 1.6e-06 58.9 129 31.0
Oeu008674.2 Olea europaea HOM05D006269 ORTHO05D001487 1.6e-06 58.9 133 27.8
Prupe.2G181700 Prunus persica HOM05D006269 ORTHO05D001487 1.6e-06 58.9 163 27.0
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 2.1e-06 58.5 99 35.4
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.1e-06 58.5 99 33.3
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 2.1e-06 58.5 99 34.3
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 3.6e-06 57.8 99 34.3
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 4.7e-06 57.4 128 27.3
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 4.7e-06 57.4 129 28.7
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 4.7e-06 57.4 134 35.1
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 4.7e-06 57.4 134 32.8
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 4.7e-06 57.4 114 32.5
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 4.7e-06 57.4 328 25.0
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 6.1e-06 57.0 99 33.3
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 6.1e-06 57.0 99 34.3
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 6.1e-06 57.0 133 32.3
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 6.1e-06 57.0 134 35.1
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 6.1e-06 57.0 134 35.1
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 6.1e-06 57.0 129 30.2
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 8.0e-06 56.6 99 34.3
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 8.0e-06 56.6 99 32.3
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 8.0e-06 56.6 99 32.3
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 8.0e-06 56.6 99 32.3
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 8.0e-06 56.6 99 34.3
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 8.0e-06 56.6 101 32.7


User provided reference genes

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