Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.7e-31 137.5 66 100.0
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.1e-26 120.2 65 84.6
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-23 111.3 63 85.7
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.3e-23 110.2 63 87.3
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-22 108.2 63 85.7
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.8e-20 100.9 63 81.0
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.0e-14 80.1 52 76.9
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.2e-14 79.7 52 75.0
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.0e-13 78.6 52 75.0
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.0e-13 78.6 52 75.0
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 7.8e-13 76.6 52 71.2
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.3e-12 75.1 53 69.8
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 6.6e-12 73.6 57 63.2
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 8.6e-12 73.2 52 69.2
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 8.6e-12 73.2 59 62.7
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.1e-11 72.8 57 59.6
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.5e-11 72.4 65 56.9
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.5e-11 72.4 51 68.6
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.5e-11 72.4 57 57.9
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.5e-11 72.4 52 67.3
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.9e-11 72.0 48 66.7
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.5e-11 71.6 63 65.1
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 3.3e-11 71.2 57 57.9
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 3.3e-11 71.2 57 57.9
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 4.3e-11 70.9 44 77.3
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 5.6e-11 70.5 48 68.8
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 5.6e-11 70.5 57 59.6
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 7.3e-11 70.1 48 68.8
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 7.3e-11 70.1 53 66.0
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 7.3e-11 70.1 48 70.8
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 7.3e-11 70.1 49 67.3
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 9.5e-11 69.7 53 64.2
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 9.5e-11 69.7 48 70.8
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 1.2e-10 69.3 52 57.7
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.2e-10 69.3 43 74.4
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.6e-10 68.9 53 58.5
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.6e-10 68.9 50 62.0
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.6e-10 68.9 50 64.0
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.6e-10 68.9 48 68.8
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 2.1e-10 68.6 50 66.0
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 2.1e-10 68.6 50 66.0
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 2.1e-10 68.6 50 66.0
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.1e-10 68.6 49 63.3
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.1e-10 68.6 49 63.3
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.8e-10 68.2 43 72.1
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 2.8e-10 68.2 48 68.8
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.8e-10 68.2 54 63.0
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-10 68.2 50 66.0
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-10 68.2 50 66.0
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 2.8e-10 68.2 50 68.0
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 2.8e-10 68.2 50 66.0
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.8e-10 68.2 50 68.0
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 2.8e-10 68.2 61 57.4
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.8e-10 68.2 44 72.7
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.8e-10 68.2 49 67.3
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.8e-10 68.2 53 62.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 3.6e-10 67.8 48 68.8
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 3.6e-10 67.8 53 60.4
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 3.6e-10 67.8 48 66.7
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 3.6e-10 67.8 52 59.6
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.6e-10 67.8 48 62.5
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.6e-10 67.8 48 62.5
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 3.6e-10 67.8 47 66.0
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 3.6e-10 67.8 43 72.1
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.6e-10 67.8 43 72.1
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.6e-10 67.8 43 72.1
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 4.7e-10 67.4 48 62.5
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 4.7e-10 67.4 59 54.2
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 66.0
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 4.7e-10 67.4 50 60.0
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 6.1e-10 67.0 50 64.0
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 6.1e-10 67.0 43 69.8
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.1e-10 67.0 50 64.0
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 6.1e-10 67.0 49 61.2
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 6.1e-10 67.0 59 55.9
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 6.1e-10 67.0 50 66.0
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 8.0e-10 66.6 45 71.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.0e-09 66.2 45 62.2
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.0e-09 66.2 52 59.6
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.0e-09 66.2 49 61.2
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 1.4e-09 65.9 69 50.7
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.4e-09 65.9 54 61.1
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.4e-09 65.9 54 61.1
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.4e-09 65.9 48 62.5
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.4e-09 65.9 62 53.2
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.4e-09 65.9 49 61.2
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.4e-09 65.9 45 64.4
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 1.8e-09 65.5 50 64.0
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.8e-09 65.5 50 64.0
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.8e-09 65.5 50 64.0
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.8e-09 65.5 50 64.0
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.8e-09 65.5 43 69.8
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.8e-09 65.5 49 59.2
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.3e-09 65.1 43 69.8
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.3e-09 65.1 48 58.3
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.1e-09 64.7 48 62.5
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 3.1e-09 64.7 44 68.2
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 3.1e-09 64.7 53 58.5
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 4.0e-09 64.3 43 72.1
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 5.2e-09 63.9 43 69.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 6.8e-09 63.5 49 55.1
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 6.8e-09 63.5 49 55.1
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 6.8e-09 63.5 49 55.1
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 6.8e-09 63.5 49 55.1
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.2e-08 62.8 43 67.4
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-08 62.8 43 65.1
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.5e-08 62.4 43 69.8
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.5e-08 62.4 48 56.2
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 2.0e-08 62.0 43 67.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 2.0e-08 62.0 45 64.4
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 2.0e-08 62.0 41 68.3
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 3.4e-08 61.2 63 54.0
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 5.8e-08 60.5 43 65.1
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.5e-08 60.1 40 75.0
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.5e-08 60.1 40 75.0
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 9.8e-08 59.7 52 51.9
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 9.8e-08 59.7 54 51.9
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 9.8e-08 59.7 51 58.8
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.7e-07 58.9 50 54.0
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.7e-07 58.9 53 52.8
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.9e-07 58.2 40 72.5
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.9e-07 58.2 40 72.5
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.9e-07 58.2 48 56.2
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.9e-07 58.2 59 47.5
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 6.4e-07 57.0 53 58.5
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 8.3e-07 56.6 43 62.8
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 8.3e-07 56.6 49 55.1
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.1e-06 56.2 42 61.9
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 3.2e-06 54.7 43 65.1
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 4.1e-06 54.3 43 58.1
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 9.2e-06 53.1 48 54.2


User provided reference genes

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