Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 7.7e-225 783.5 393 100.0
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.9e-224 781.6 393 99.7
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 9.4e-215 750.0 396 95.5
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.2e-193 679.9 397 88.7
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 9.8e-188 660.2 396 86.1
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.9e-187 657.9 396 85.6
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.0e-176 622.1 396 81.1
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 3.3e-175 618.6 397 80.6
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.1e-135 487.3 392 66.6
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.1e-130 470.7 395 63.0
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.4e-125 453.8 397 62.2
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.2e-105 387.5 397 54.7
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.5e-103 380.6 392 53.1
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 7.4e-103 378.3 395 53.4
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 9.7e-103 377.9 393 53.9
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 2.2e-102 376.7 391 54.0
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 3.7e-102 375.9 397 53.9
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 9.1e-101 371.3 397 53.9
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.2e-100 370.9 393 53.7
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.5e-100 370.5 395 50.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 3.8e-99 365.9 396 52.5
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 8.5e-99 364.8 398 53.0
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.5e-98 363.2 396 51.5
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 4.2e-98 362.5 384 52.6
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 5.5e-98 362.1 395 52.9
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 7.2e-98 361.7 395 52.9
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 9.4e-98 361.3 391 52.7
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 4.7e-97 359.0 410 49.5
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.0e-96 356.3 395 50.4
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.0e-96 356.3 394 52.0
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 6.7e-96 355.1 393 50.6
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 8.8e-96 354.8 414 48.8
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.6e-95 353.2 404 51.0
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.8e-93 347.1 396 48.2
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.0e-92 343.6 390 50.0
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.0e-92 343.6 390 50.0
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 3.5e-92 342.8 392 51.0
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 7.7e-92 341.7 408 50.0
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.0e-91 341.3 413 49.2
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.0e-91 341.3 413 49.2
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 5.5e-90 335.5 393 49.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 7.2e-90 335.1 404 48.5
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 8.0e-89 331.6 390 49.7
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.0e-88 331.3 387 49.9
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.0e-88 331.3 398 49.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 5.2e-88 328.9 389 49.1
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 5.2e-88 328.9 390 48.2
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.2e-87 327.8 373 50.7
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.4e-87 325.9 354 52.8
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 5.7e-87 325.5 397 47.1
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.2e-86 323.6 394 49.5
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 7.0e-85 318.5 390 48.2
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.6e-84 317.4 325 52.6
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 5.9e-84 315.5 396 46.0
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.3e-83 314.3 396 46.0
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 8.5e-83 311.6 387 47.0
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.5e-82 310.1 386 47.2
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 5.5e-82 308.9 409 46.7
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 9.4e-82 308.1 394 47.0
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.1e-81 307.0 397 47.4
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.1e-81 307.0 390 46.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.6e-81 306.2 385 46.2
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 4.7e-81 305.8 396 46.5
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 4.7e-81 305.8 386 45.9
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 8.0e-81 305.1 399 45.1
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.0e-80 304.7 385 47.5
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.8e-80 303.9 385 46.0
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 2.3e-80 303.5 394 45.9
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 6.8e-80 302.0 388 46.9
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.2e-79 301.2 393 45.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.2e-79 301.2 385 46.5
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.0e-79 300.4 390 45.1
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.7e-79 298.9 298 53.7
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 5.7e-79 298.9 394 44.9
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 7.5e-79 298.5 391 46.0
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 4.8e-78 295.8 411 44.5
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 6.3e-78 295.4 366 49.5
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.1e-77 294.7 407 43.5
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 2.4e-77 293.5 392 42.9
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.1e-77 293.1 407 43.7
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 4.1e-77 292.7 398 43.5
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.2e-76 291.2 392 45.2
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.2e-76 291.2 389 46.0
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.7e-76 290.0 400 43.2
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 3.5e-76 289.7 395 44.8
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 5.9e-76 288.9 321 48.3
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 5.9e-76 288.9 390 45.4
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 7.7e-76 288.5 388 44.1
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 2.3e-75 287.0 386 44.3
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 6.5e-75 285.4 394 43.1
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.1e-74 284.6 385 44.7
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.9e-74 283.9 388 45.1
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 1.9e-74 283.9 305 51.1
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.9e-74 283.9 297 49.8
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 2.5e-74 283.5 392 42.3
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.6e-73 280.8 401 43.1
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.6e-73 280.8 391 43.7
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.6e-73 280.8 392 42.1
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.6e-73 280.8 385 43.9
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 2.8e-73 280.0 297 50.2
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 3.6e-73 279.6 389 44.2
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.0e-72 278.1 396 45.5
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.4e-72 277.7 396 40.7
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.2e-71 274.6 388 44.6
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.2e-71 274.6 388 44.3
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.2e-71 274.6 389 44.2
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.0e-71 273.9 385 43.6
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 3.4e-71 273.1 393 43.8
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 5.7e-71 272.3 302 48.0
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.5e-71 271.9 434 40.6
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 9.8e-71 271.6 391 43.7
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.7e-70 270.8 389 43.7
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 4.9e-70 269.2 389 44.5
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 6.3e-70 268.9 392 43.1
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.1e-69 268.1 386 42.5
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.4e-69 267.7 309 46.3
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.8e-69 267.3 387 43.4
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 3.1e-69 266.5 388 42.5
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 9.2e-69 265.0 393 40.7
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 9.2e-69 265.0 386 42.7
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 1.2e-68 264.6 394 42.4
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 2.3e-67 260.4 385 42.3
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.4e-64 251.1 396 42.7
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.4e-64 251.1 300 47.3
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.0e-64 250.0 258 50.8
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 4.0e-64 249.6 385 40.8
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.7e-62 244.2 346 43.9
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 4.1e-61 239.6 350 41.7
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.7e-60 236.9 402 38.6
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.6e-60 236.1 349 43.3
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 6.6e-59 232.3 386 39.9
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.9e-58 230.7 305 42.6
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.9e-58 230.7 305 42.6
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 5.6e-58 229.2 346 40.5
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 5.6e-58 229.2 305 42.6
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.6e-57 227.6 345 44.1
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.4e-56 224.6 408 37.7
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.9e-54 216.9 297 41.4
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.4e-53 213.8 346 39.0
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 3.2e-53 213.4 330 38.8
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 7.8e-52 208.8 458 33.4
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 5.6e-50 202.6 215 52.6
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.6e-49 201.1 376 36.7
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 3.7e-46 189.9 316 37.7
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 4.9e-46 189.5 349 37.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.4e-46 189.1 352 35.5
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 3.0e-43 180.3 295 39.0
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 5.1e-43 179.5 270 40.7
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.4e-40 170.6 359 34.3
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.1e-40 170.2 184 51.6
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 7.3e-34 149.1 147 52.4
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.1e-32 143.7 282 34.0
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.4e-31 140.2 185 44.9
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 3.8e-30 136.7 240 38.8
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 2.3e-27 127.5 199 35.7
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 8.7e-27 125.6 162 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.5e-26 124.8 480 24.6
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.3e-26 123.2 148 50.0
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.8e-24 117.9 161 44.1
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 2.0e-23 114.4 209 35.9
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.3e-22 111.7 314 29.3
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 5.4e-21 106.3 232 35.3
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.5e-18 97.4 186 33.3
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 7.4e-18 95.9 138 39.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.1e-16 90.5 233 32.6
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 9.0e-16 89.0 108 38.9
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 4.5e-15 86.7 437 26.3
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 8.4e-14 82.4 91 45.1
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.9e-13 81.3 76 50.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.5e-13 79.7 101 45.5
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 6.0e-12 76.3 163 30.1
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.8e-11 74.7 77 48.1
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 2.5e-10 70.9 52 65.4
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.6e-09 68.2 128 36.7
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.7e-09 67.0 142 29.6
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 4.8e-09 66.6 327 25.7
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 6.2e-09 66.2 44 70.5
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 8.2e-09 65.9 43 67.4
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 5.3e-08 63.2 86 48.8
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.5e-07 61.6 161 26.1
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.3e-06 58.5 128 37.5
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-06 58.5 52 48.1


User provided reference genes

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