Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5322 Fragaria x ananassa HOM05D007616 ORTHO05D008751 2.3e-51 205.3 107 100.0
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 6.4e-25 117.5 114 63.2
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 2.4e-24 115.5 116 63.8
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 2.4e-24 115.5 116 63.8
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 2.8e-20 102.1 118 58.5
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.1e-16 90.1 94 54.3
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 1.1e-16 90.1 100 56.0
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 4.2e-16 88.2 100 55.0
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 4.2e-16 88.2 100 55.0
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 5.5e-16 87.8 113 52.2
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 7.1e-16 87.4 100 54.0
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 9.3e-16 87.0 100 54.0
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 1.6e-15 86.3 121 48.8
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 7.9e-15 84.0 111 52.3
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.3e-14 82.4 96 55.2
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 2.3e-14 82.4 110 50.0
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 8.7e-14 80.5 109 47.7
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 1.1e-13 80.1 100 56.0
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 1.1e-13 80.1 94 52.1
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 1.1e-13 80.1 117 46.2
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 1.1e-13 80.1 94 50.0
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 1.5e-13 79.7 106 49.1
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.9e-13 79.3 124 46.0
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 1.9e-13 79.3 109 46.8
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.5e-13 79.0 111 46.8
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 3.3e-13 78.6 109 47.7
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 3.3e-13 78.6 95 54.7
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 4.3e-13 78.2 93 54.8
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 2.8e-12 75.5 110 46.4
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.8e-12 75.5 100 47.0
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 3.7e-12 75.1 110 46.4
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 4.8e-12 74.7 100 51.0
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 6.2e-12 74.3 107 45.8
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 3.1e-11 72.0 99 50.5
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 4.0e-11 71.6 97 48.5
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 5.3e-11 71.2 94 46.8
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 5.3e-11 71.2 101 46.5
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 5.3e-11 71.2 133 39.1
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 9.0e-11 70.5 106 47.2
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.2e-10 70.1 97 46.4
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 1.2e-10 70.1 104 44.2
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 1.5e-10 69.7 98 51.0
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 1.5e-10 69.7 106 47.2
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 2.0e-10 69.3 122 43.4
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 2.0e-10 69.3 105 44.8
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 2.6e-10 68.9 97 46.4
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 2.6e-10 68.9 92 52.2
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 2.6e-10 68.9 98 45.9
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 3.4e-10 68.6 101 42.6
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 3.4e-10 68.6 101 42.6
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 3.4e-10 68.6 126 40.5
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 4.5e-10 68.2 92 45.7
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 4.5e-10 68.2 108 45.4
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 5.8e-10 67.8 109 47.7
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 5.8e-10 67.8 96 50.0
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 5.8e-10 67.8 115 47.8
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 5.8e-10 67.8 100 45.0
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 1.0e-09 67.0 97 46.4
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 1.3e-09 66.6 144 39.6
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 1.3e-09 66.6 36 83.3
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 1.3e-09 66.6 98 45.9
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 1.7e-09 66.2 113 41.6
Ciclev10003995m.g Citrus clementina HOM05D007616 ORTHO05D008751 2.2e-09 65.9 46 71.7
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 2.2e-09 65.9 95 43.2
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 3.8e-09 65.1 135 34.8
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 8.4e-09 63.9 93 44.1
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 8.4e-09 63.9 116 39.7
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 1.1e-08 63.5 97 44.3
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 1.9e-08 62.8 121 38.8
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 2.5e-08 62.4 122 41.8
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 4.2e-08 61.6 68 52.9
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 4.2e-08 61.6 97 45.4
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 5.5e-08 61.2 109 41.3
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 7.1e-08 60.8 103 40.8
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 1.2e-07 60.1 108 40.7
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.7e-07 58.9 115 41.7
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 3.5e-07 58.5 125 39.2
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.0e-06 57.0 109 39.4
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.3e-06 56.6 111 37.8
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 3.9e-06 55.1 107 36.4
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 3.9e-06 55.1 107 36.4
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 5.1e-06 54.7 115 34.8
MELO3C003756.2 Cucumis melo HOM05D002661 ORTHO05D002786 6.7e-06 54.3 110 34.5
Sp2g05500 Schrenkiella parvula HOM05D012662 ORTHO05D008751 6.7e-06 54.3 110 36.4
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 8.7e-06 53.9 121 36.4


User provided reference genes

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