Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.5e-113 412.9 213 100.0
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 9.6e-113 410.2 213 99.1
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.9e-109 397.9 213 97.7
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 7.1e-108 394.0 216 94.4
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.6e-99 364.8 189 99.5
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.6e-91 339.7 181 97.8
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 3.0e-82 308.9 212 80.7
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 5.3e-79 298.1 215 73.0
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.5e-78 296.6 212 75.5
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 7.6e-78 294.3 210 77.1
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.7e-77 293.1 204 76.5
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.5e-76 289.3 217 72.8
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 9.3e-76 287.3 216 73.1
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 9.3e-76 287.3 215 72.6
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.5e-75 285.4 215 72.1
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 7.9e-75 284.3 213 73.2
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.0e-74 283.9 220 72.3
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 1.6e-72 276.6 194 75.3
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 2.2e-72 276.2 223 68.2
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.1e-71 273.9 211 71.6
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.1e-71 273.9 210 71.0
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.5e-70 270.0 210 71.4
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.0e-70 269.6 206 69.4
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.0e-70 269.6 195 74.4
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 2.6e-70 269.2 206 71.4
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 4.5e-70 268.5 206 69.4
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 4.5e-70 268.5 220 67.3
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 1.7e-69 266.5 207 69.6
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.7e-69 266.5 203 70.9
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 2.2e-69 266.2 205 68.8
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 2.9e-69 265.8 218 68.3
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 3.8e-69 265.4 214 67.8
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.1e-68 263.8 210 69.5
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 4.2e-68 261.9 190 72.6
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 7.2e-68 261.2 213 69.0
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.2e-67 260.4 199 66.3
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 2.7e-67 259.2 211 66.4
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.1e-67 258.1 200 66.5
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 7.9e-67 257.7 180 77.8
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.0e-66 257.3 200 66.5
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.0e-66 255.8 216 64.8
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 3.9e-66 255.4 216 66.2
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 3.9e-66 255.4 211 64.0
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 8.8e-66 254.2 209 67.9
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 8.8e-66 254.2 208 68.8
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.5e-65 253.4 214 66.8
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 3.3e-65 252.3 210 68.1
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 7.4e-65 251.1 228 61.8
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 7.4e-65 251.1 177 76.3
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 9.7e-65 250.8 193 71.0
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-64 250.4 225 62.2
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.1e-63 247.3 206 66.0
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.1e-63 247.3 203 65.5
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.8e-63 246.5 207 64.7
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 5.3e-63 245.0 217 64.5
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.3e-63 245.0 198 64.6
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 5.3e-63 245.0 203 68.0
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 6.9e-63 244.6 205 65.4
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 6.9e-63 244.6 207 64.3
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.2e-62 243.8 218 64.2
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.2e-62 243.8 207 65.7
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 1.2e-62 243.8 211 62.6
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 2.6e-62 242.7 213 62.4
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 3.4e-62 242.3 149 85.9
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 4.5e-62 241.9 197 64.5
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 5.9e-62 241.5 232 60.8
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 7.7e-62 241.1 204 66.2
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 7.7e-62 241.1 209 62.2
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.0e-61 240.7 214 64.5
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 1.3e-61 240.4 218 64.2
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 1.7e-61 240.0 205 66.3
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.7e-61 240.0 208 62.5
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.7e-61 240.0 177 71.8
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.7e-61 240.0 231 59.3
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.9e-61 239.2 205 66.3
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.9e-61 239.2 205 66.3
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 2.9e-61 239.2 209 61.7
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 5.0e-61 238.4 213 62.9
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 5.0e-61 238.4 178 70.2
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 6.5e-61 238.0 192 67.7
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.1e-60 237.3 205 64.9
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.1e-60 237.3 211 61.6
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.4e-60 236.9 205 65.9
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.4e-60 236.9 216 62.5
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 2.5e-60 236.1 207 65.2
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 4.2e-60 235.3 216 62.5
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 5.5e-60 235.0 150 80.0
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 5.5e-60 235.0 207 63.8
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 7.2e-60 234.6 205 65.9
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.6e-59 233.4 163 75.5
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 6.1e-59 231.5 163 75.5
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 6.1e-59 231.5 189 65.6
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 7.9e-59 231.1 198 63.6
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 1.0e-58 230.7 223 61.4
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 1.0e-58 230.7 223 61.4
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.0e-58 230.7 181 70.7
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 2.3e-58 229.6 218 61.0
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 3.9e-58 228.8 174 71.8
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 5.1e-58 228.4 217 62.2
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 5.1e-58 228.4 217 62.2
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 6.7e-58 228.0 209 63.2
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 8.8e-58 227.6 199 64.3
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.5e-57 226.9 201 63.2
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.5e-57 226.9 214 60.7
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 2.0e-57 226.5 214 63.6
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.8e-56 221.9 196 63.3
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.6e-54 216.1 176 68.8
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 4.5e-54 215.3 203 62.6
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.0e-53 214.2 167 71.9
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.3e-53 213.8 204 63.2
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 2.2e-53 213.0 139 75.5
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 4.2e-52 208.8 161 72.0
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 5.5e-52 208.4 205 59.5
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.0e-50 204.1 140 76.4
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 2.0e-49 199.9 195 62.6
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 7.5e-49 198.0 210 57.1
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.7e-48 196.8 186 61.8
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 3.7e-48 195.7 210 56.2
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.0e-45 187.6 181 58.6
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 4.2e-44 182.2 126 76.2
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.1e-43 179.9 131 71.0
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 7.5e-41 171.4 133 68.4
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.3e-40 170.6 149 61.1
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.3e-40 170.6 149 61.1
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 6.3e-40 168.3 126 65.1
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.1e-39 167.5 200 51.5
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 2.7e-38 162.9 209 50.7
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.3e-32 144.1 120 62.5
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.8e-31 140.2 136 61.8
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.4e-31 139.8 203 43.3
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 7.0e-31 138.3 148 56.8
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.3e-29 133.3 131 61.8
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.3e-24 117.5 76 82.9
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 8.6e-21 104.8 68 76.5
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 8.6e-21 104.8 68 76.5
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.1e-18 96.3 70 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 4.4e-17 92.4 67 74.6
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 2.3e-10 70.1 45 77.8
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 2.0e-09 67.0 130 37.7


User provided reference genes

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