Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.9e-207 723.8 377 100.0
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.5e-201 705.3 377 97.1
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.3e-201 704.9 409 91.9
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 9.0e-199 696.8 388 94.3
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.8e-197 691.4 409 90.0
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.5e-196 688.7 409 89.5
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.2e-196 688.3 409 90.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.6e-190 668.7 388 91.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 2.9e-173 612.1 386 81.6
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 4.7e-171 604.7 388 80.4
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 3.5e-166 588.6 388 78.4
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 2.8e-160 568.9 388 76.8
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 4.9e-160 568.2 388 76.8
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 5.4e-159 564.7 387 76.5
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 5.9e-158 561.2 388 75.3
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 7.7e-158 560.8 388 76.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.0e-157 560.5 385 76.1
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 8.6e-157 557.4 388 75.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.5e-156 556.6 386 75.9
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 5.6e-156 554.7 388 74.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.6e-155 553.1 388 74.0
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.0e-154 550.4 388 74.2
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 5.2e-154 548.1 388 73.7
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 6.8e-154 547.7 388 72.7
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 5.7e-153 544.7 388 72.4
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.4e-152 541.2 388 73.7
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 2.4e-151 539.3 388 72.2
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.6e-150 536.6 388 71.9
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 7.8e-150 534.3 388 72.2
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 3.0e-149 532.3 387 71.8
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.5e-148 530.0 389 71.0
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 7.3e-148 527.7 388 70.6
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.6e-147 526.6 385 70.4
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 3.6e-147 525.4 390 71.3
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 4.7e-147 525.0 377 71.4
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 4.7e-147 525.0 387 70.5
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 8.0e-147 524.2 386 70.5
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 1.4e-146 523.5 388 70.6
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.4e-146 523.5 386 70.2
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.8e-146 523.1 389 72.2
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 2.3e-146 522.7 385 70.4
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.3e-146 522.7 385 70.1
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 8.9e-146 520.8 385 69.9
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 8.9e-146 520.8 406 68.2
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 8.9e-146 520.8 388 71.4
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.5e-145 520.0 386 69.9
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 2.0e-145 519.6 383 70.8
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.0e-145 519.6 389 71.0
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 3.4e-145 518.8 388 69.3
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.4e-145 518.8 385 70.4
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 3.4e-145 518.8 385 70.4
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.4e-145 518.5 388 70.4
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.4e-145 518.5 388 71.9
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 4.4e-145 518.5 385 69.1
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 9.8e-145 517.3 386 70.2
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 4.9e-144 515.0 380 69.7
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 6.4e-144 514.6 388 69.3
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.1e-143 513.8 387 69.5
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.1e-143 513.8 388 70.9
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.4e-143 513.5 388 70.9
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.4e-143 512.7 388 68.3
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.2e-143 512.3 384 70.8
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.1e-143 511.9 380 71.1
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 4.1e-143 511.9 383 69.7
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 5.4e-143 511.5 388 70.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 7.0e-143 511.1 393 70.7
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 9.2e-143 510.8 387 68.5
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.2e-142 510.4 389 70.7
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.6e-142 508.4 395 67.3
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.0e-141 507.3 388 71.6
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.3e-141 506.9 388 69.3
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.3e-141 506.1 337 77.4
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 6.6e-141 504.6 388 69.1
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 6.6e-141 504.6 389 69.7
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.9e-140 503.1 383 68.4
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 2.3e-138 496.1 390 70.0
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.6e-137 492.7 389 68.1
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.7e-136 490.0 337 75.1
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.2e-136 489.6 414 66.7
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.9e-136 489.2 336 75.6
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 6.4e-136 488.0 388 66.8
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.9e-135 486.5 338 73.4
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 4.1e-135 485.3 385 67.8
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 7.1e-135 484.6 386 67.4
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 3.5e-134 482.3 385 67.3
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 6.0e-134 481.5 386 67.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 3.0e-133 479.2 387 66.4
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.0e-133 479.2 392 65.8
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 6.6e-133 478.0 385 67.5
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 8.6e-133 477.6 385 67.3
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 5.6e-132 474.9 388 64.2
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 9.5e-132 474.2 385 66.5
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 9.5e-132 474.2 388 65.7
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.1e-131 473.0 386 66.3
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.1e-131 473.0 386 66.3
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 6.2e-131 471.5 387 65.9
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 8.1e-131 471.1 386 65.8
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 8.1e-131 471.1 387 65.6
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.4e-130 470.3 386 65.5
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.4e-130 470.3 386 64.2
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 6.8e-130 468.0 382 66.8
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 3.4e-129 465.7 382 67.0
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.2e-128 463.0 341 72.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.9e-128 462.6 388 64.2
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 3.7e-128 462.2 382 66.2
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 8.4e-128 461.1 388 64.2
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.9e-127 459.9 388 64.2
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.4e-127 459.5 390 63.6
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.6e-126 456.8 382 65.2
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 2.8e-123 446.0 383 63.4
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.1e-122 444.1 379 64.6
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.5e-121 440.3 337 68.2
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.3e-117 427.2 386 61.9
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 9.0e-114 414.5 299 77.3
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 3.4e-113 412.5 394 58.1
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 7.6e-113 411.4 388 58.0
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 6.4e-112 408.3 379 59.1
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 6.4e-112 408.3 392 56.9
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 3.2e-111 406.0 397 58.2
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.7e-110 402.9 388 58.2
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 7.4e-108 394.8 377 56.8
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.1e-106 389.4 379 58.3
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 2.6e-105 386.3 399 55.6
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.5e-100 369.8 271 70.5
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 6.3e-91 338.6 295 57.6
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 1.2e-89 334.3 413 49.9
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.7e-86 323.2 226 72.6
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 2.9e-80 303.1 265 59.6
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 5.0e-80 302.4 359 48.7
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 6.5e-80 302.0 438 42.7
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 7.4e-68 261.9 386 43.3
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 1.8e-53 214.2 471 33.8
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.5e-49 199.9 144 77.1
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 5.5e-47 192.6 168 62.5
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.4e-45 188.0 243 46.1
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.8e-45 185.7 131 74.0
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.6e-41 174.5 128 76.6
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.0e-40 171.8 169 56.8
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.2e-29 132.9 383 30.5
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 5.2e-29 132.9 149 55.0
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 4.9e-27 126.3 177 40.7
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-26 124.8 89 78.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 9.2e-26 122.1 155 50.3
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 3.3e-23 113.6 138 52.2
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.1e-22 110.9 120 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.1e-21 108.6 213 37.1
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-19 101.3 82 63.4
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.1e-18 98.6 108 52.8
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 7.1e-18 95.9 99 54.5
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-17 95.1 98 55.1
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.7e-17 94.0 79 67.1
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 4.6e-17 93.2 127 51.2
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 8.6e-16 89.0 127 49.6
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 2.1e-14 84.3 106 45.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 5.2e-13 79.7 125 46.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.0e-12 77.8 41 90.2
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 4.4e-12 76.6 49 71.4
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 7.6e-12 75.9 81 51.9
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.1e-10 69.3 51 62.7
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.1e-09 67.8 100 46.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 2.1e-09 67.8 36 94.4
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 2.7e-09 67.4 72 44.4
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 4.6e-09 66.6 42 81.0
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 5.6e-07 59.7 77 44.2
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 2.8e-06 57.4 38 73.7


User provided reference genes

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