Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.3e-226 788.1 419 100.0
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.9e-207 724.2 421 92.9
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.2e-205 718.4 420 92.6
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 1.4e-203 713.0 424 91.7
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 4.9e-113 412.1 441 57.1
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 2.3e-110 403.3 436 56.4
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.4e-107 393.3 439 55.6
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.4e-91 340.9 451 45.5
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.8e-84 316.6 443 47.6
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 2.5e-80 303.5 450 44.9
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 4.2e-80 302.8 435 43.7
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 5.5e-80 302.4 456 43.2
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.6e-79 300.8 452 44.0
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.7e-79 300.1 448 44.4
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 6.1e-79 298.9 447 44.3
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 8.0e-79 298.5 448 45.1
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 3.0e-78 296.6 427 44.3
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 5.2e-78 295.8 461 43.6
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 6.7e-78 295.4 448 45.3
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.3e-77 293.1 445 46.1
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 6.3e-76 288.9 450 45.8
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 2.4e-75 287.0 428 43.0
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 5.3e-75 285.8 442 41.9
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.2e-74 284.6 443 42.4
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.7e-74 283.5 449 41.9
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.2e-72 276.6 441 40.6
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.7e-71 273.5 455 41.5
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-70 271.6 450 45.1
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 3.0e-70 270.0 449 41.6
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.2e-69 268.1 451 45.0
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 4.4e-69 266.2 452 40.5
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 5.7e-69 265.8 449 44.8
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 7.5e-69 265.4 443 41.1
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 2.2e-68 263.8 455 39.6
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 1.1e-67 261.5 438 41.3
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.0e-66 257.3 445 39.1
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 5.9e-66 255.8 442 39.6
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.1e-64 251.5 443 39.5
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 3.3e-64 250.0 464 38.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 3.3e-64 250.0 448 39.7
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 5.5e-64 249.2 378 42.9
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 2.8e-63 246.9 440 39.5
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 8.0e-63 245.4 438 40.4
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 5.2e-62 242.7 434 40.8
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 6.8e-62 242.3 443 41.1
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 9.8e-61 238.4 429 38.9
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.7e-60 237.7 433 39.5
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 9.2e-59 231.9 483 35.4
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.7e-57 227.6 435 38.4
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 2.9e-57 226.9 441 40.8
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.5e-56 224.6 439 37.4
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 2.5e-56 223.8 438 39.5
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 1.6e-55 221.1 448 35.9
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.8e-55 220.3 426 36.6
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.0e-54 218.4 459 37.5
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.3e-54 217.2 446 37.7
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 2.3e-54 217.2 438 37.4
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 4.0e-54 216.5 439 37.6
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 6.8e-54 215.7 444 36.3
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.9e-54 215.3 436 37.2
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 3.4e-53 213.4 452 38.1
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.4e-53 213.0 417 35.7
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 9.8e-53 211.8 439 36.9
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.3e-52 211.5 329 41.6
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 1.3e-52 211.5 493 33.5
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.3e-52 211.5 433 37.4
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 2.2e-52 210.7 438 36.8
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 6.4e-52 209.1 461 36.9
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.3e-52 208.8 443 38.4
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 8.3e-52 208.8 438 36.5
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.9e-51 207.6 418 36.6
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 5.4e-51 206.1 482 34.0
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 9.2e-51 205.3 430 36.3
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 4.6e-50 203.0 449 35.2
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 7.8e-50 202.2 430 35.8
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 1.3e-49 201.4 443 36.6
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.7e-49 201.1 371 37.2
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.9e-49 199.9 433 35.3
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 8.6e-49 198.7 452 35.2
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.5e-48 197.2 466 34.8
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 3.3e-48 196.8 476 33.8
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 5.6e-48 196.1 422 35.8
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.6e-48 196.1 453 35.3
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 7.3e-48 195.7 423 35.5
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 2.1e-47 194.1 444 36.3
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.1e-47 194.1 455 36.0
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 3.6e-47 193.4 450 34.7
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 3.6e-47 193.4 450 34.7
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 4.7e-47 193.0 436 37.2
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 8.0e-47 192.2 422 35.1
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.1e-46 191.8 423 34.3
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.4e-46 191.4 439 33.0
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 6.8e-46 189.1 434 33.6
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 8.9e-46 188.7 434 32.7
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.2e-45 188.3 441 34.2
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.5e-45 188.0 450 35.3
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.4e-45 186.8 425 33.9
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 4.4e-45 186.4 406 34.5
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.4e-45 186.4 433 33.3
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 5.8e-45 186.0 440 36.6
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.9e-44 183.7 434 32.9
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.7e-44 183.3 438 34.0
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 8.3e-44 182.2 444 33.6
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.1e-43 181.8 414 38.4
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.4e-43 181.4 439 32.3
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.4e-43 180.6 428 34.1
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 5.4e-43 179.5 446 33.6
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 7.0e-43 179.1 431 32.5
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 9.2e-43 178.7 429 32.9
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.2e-42 178.3 437 32.5
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 2.7e-42 177.2 452 33.8
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 4.6e-42 176.4 345 38.0
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.6e-42 176.4 431 32.5
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 8.6e-41 172.2 434 33.9
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.9e-40 171.0 432 32.6
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 4.3e-40 169.9 435 31.0
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 9.5e-40 168.7 442 33.0
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 9.5e-40 168.7 321 39.6
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 4.7e-39 166.4 443 33.0
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 8.1e-39 165.6 447 32.4
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.1e-38 165.2 452 32.7
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.4e-38 164.9 435 32.9
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.4e-38 164.9 434 34.3
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 6.8e-38 162.5 454 31.5
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.3e-36 158.3 427 33.0
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 1.7e-36 157.9 446 34.8
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.9e-36 157.1 437 31.4
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 6.4e-36 156.0 408 33.6
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 1.6e-34 151.4 139 63.3
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.6e-34 151.4 438 31.3
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.1e-34 151.0 426 30.8
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.7e-34 150.6 413 32.9
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 3.5e-34 150.2 415 32.8
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 6.0e-34 149.4 433 30.7
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 5.1e-33 146.4 421 30.9
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 1.1e-32 145.2 429 32.2
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 4.3e-32 143.3 427 31.4
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.3e-32 143.3 421 30.4
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.6e-32 142.9 410 31.7
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.6e-31 141.4 361 35.7
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.2e-31 139.4 431 31.1
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.1e-31 139.0 372 34.1
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.1e-30 137.1 436 29.8
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.0e-30 136.7 426 30.8
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 6.8e-30 136.0 438 31.1
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.8e-30 136.0 424 30.9
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 8.9e-30 135.6 424 30.9
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.2e-29 135.2 446 31.6
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.2e-29 135.2 421 29.9
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 3.4e-29 133.7 433 30.0
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.3e-28 131.7 438 30.6
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.2e-28 131.0 303 34.7
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 2.2e-28 131.0 325 32.9
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.9e-28 130.6 285 36.1
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 6.4e-28 129.4 431 31.1
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 8.4e-28 129.0 432 30.6
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.9e-27 127.9 359 31.5
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 9.2e-27 125.6 409 29.8
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-26 125.2 360 31.4
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.7e-26 124.0 415 29.2
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 4.6e-26 123.2 429 29.4
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 7.8e-26 122.5 433 29.1
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 2.3e-25 120.9 427 28.8
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.3e-25 120.9 325 32.3
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.9e-25 120.2 276 35.5
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.2e-23 115.2 443 31.4
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.4e-21 107.1 178 43.3
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 1.4e-19 101.7 321 30.5
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.2e-19 100.1 417 30.7
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 4.2e-19 100.1 252 35.3
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 1.7e-17 94.7 165 38.8
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 2.0e-13 81.3 189 32.8
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 9.3e-11 72.4 391 25.1
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 1.6e-10 71.6 344 27.0
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 5.1e-09 66.6 533 22.5
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 1.5e-08 65.1 169 31.4
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 1.6e-07 61.6 245 27.3
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.8e-07 60.8 97 40.2
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 4.8e-07 60.1 154 33.1
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 6.2e-07 59.7 200 32.5
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 6.2e-07 59.7 69 40.6
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 1.1e-06 58.9 69 40.6
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 1.1e-06 58.9 69 40.6
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.1e-06 58.9 123 35.0
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 4.0e-06 57.0 107 35.5


User provided reference genes

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