Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.8e-160 568.5 288 100.0
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.2e-154 547.7 295 96.3
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.0e-145 519.2 290 93.1
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.4e-144 514.2 290 91.7
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.2e-143 511.9 295 90.8
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 6.6e-141 504.2 290 90.7
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.7e-134 482.3 290 86.2
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 7.5e-129 464.2 290 82.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 8.6e-117 424.1 220 97.7
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.3e-116 421.8 233 93.6
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 7.8e-110 401.0 288 73.6
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.9e-108 396.4 290 71.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 4.3e-108 395.2 291 72.9
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.1e-107 392.9 291 71.8
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.4e-106 390.2 311 68.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-106 390.2 204 96.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.6e-105 386.0 290 71.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.6e-105 386.0 287 70.7
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.4e-105 385.2 285 73.7
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 9.9e-105 384.0 290 71.4
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 9.9e-105 384.0 289 72.3
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 9.9e-105 384.0 286 70.6
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.7e-104 383.3 231 84.4
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.2e-104 382.9 287 70.7
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 3.8e-104 382.1 284 72.5
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 4.9e-104 381.7 282 69.1
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 6.4e-104 381.3 287 70.7
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 8.4e-104 380.9 290 72.1
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.4e-103 380.2 287 69.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.4e-103 379.4 283 69.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 5.4e-103 378.3 287 69.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-102 377.1 268 72.0
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-102 377.1 268 72.0
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.7e-102 375.9 285 69.1
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 3.5e-102 375.6 289 68.9
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 7.9e-102 374.4 290 70.3
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.0e-101 374.0 286 69.2
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.3e-101 373.6 287 67.9
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.3e-101 373.6 246 77.2
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.3e-101 373.6 320 65.0
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.3e-101 372.9 286 69.2
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 3.9e-101 372.1 232 79.7
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 5.1e-101 371.7 289 67.8
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.1e-100 370.5 230 82.2
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.1e-100 370.5 261 73.2
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.5e-100 370.2 292 68.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.9e-100 369.8 253 73.5
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.5e-100 369.4 264 74.2
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.3e-100 369.0 248 76.2
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 4.3e-100 368.6 291 68.4
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 4.3e-100 368.6 292 67.8
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 7.4e-100 367.9 250 74.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.6e-99 366.7 284 68.7
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 2.1e-99 366.3 250 73.6
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.1e-99 366.3 250 73.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.8e-99 365.9 323 62.5
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.8e-99 365.2 281 67.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 4.8e-99 365.2 250 72.8
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.2e-99 364.8 281 69.0
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 6.2e-99 364.8 250 73.6
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 8.1e-99 364.4 250 72.8
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.1e-99 364.4 284 68.7
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.1e-99 364.4 285 67.7
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.1e-98 364.0 292 67.1
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.8e-98 363.2 281 69.8
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.4e-98 362.8 249 72.7
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.4e-98 362.8 249 72.7
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 2.4e-98 362.8 246 76.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.1e-98 362.5 274 68.6
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.1e-98 362.5 274 68.6
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.1e-98 362.5 274 68.6
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 5.3e-98 361.7 249 72.3
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 5.3e-98 361.7 283 67.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 6.9e-98 361.3 249 76.3
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.0e-98 360.9 285 66.3
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-97 360.5 285 66.3
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.2e-97 360.5 287 68.3
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.5e-97 358.6 251 72.9
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 5.8e-97 358.2 251 72.5
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.8e-97 358.2 282 68.1
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 7.6e-97 357.8 282 66.3
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 9.9e-97 357.5 233 76.8
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 9.9e-97 357.5 286 68.2
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.3e-96 357.1 250 71.6
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.9e-96 355.9 231 76.6
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.9e-96 355.9 266 70.3
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.9e-95 353.2 237 73.8
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.4e-95 352.8 233 76.0
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 7.1e-95 351.3 285 64.2
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 2.1e-94 349.7 285 63.5
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.6e-94 348.6 285 63.5
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 6.0e-94 348.2 235 74.5
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 7.9e-94 347.8 253 70.0
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 7.9e-94 347.8 253 70.0
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.5e-92 343.6 284 65.8
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 2.5e-92 342.8 273 64.8
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 4.3e-92 342.0 229 75.1
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 3.7e-91 339.0 224 77.2
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 3.7e-91 339.0 247 70.0
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.2e-91 338.2 234 73.5
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 8.1e-91 337.8 250 66.8
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 8.1e-91 337.8 232 72.0
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 5.3e-90 335.1 245 69.8
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 5.3e-90 335.1 267 66.3
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.2e-89 334.0 272 65.8
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.9e-88 328.6 285 63.2
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.5e-87 326.2 238 67.6
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 8.7e-85 317.8 266 64.3
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 3.3e-84 315.8 204 76.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 5.7e-84 315.1 232 69.4
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.6e-83 313.5 217 72.4
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 4.8e-83 312.0 230 69.6
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 8.2e-83 311.2 199 76.4
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.4e-82 310.5 231 68.8
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 5.3e-82 308.5 202 78.2
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-81 307.4 233 72.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.0e-81 306.6 286 58.0
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 5.9e-81 305.1 230 67.0
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 2.9e-80 302.8 268 61.2
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.5e-80 301.6 194 78.9
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.1e-79 300.8 199 74.9
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 4.8e-75 285.4 229 65.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 6.3e-75 285.0 232 64.7
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 8.2e-75 284.6 200 74.5
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 6.9e-74 281.6 199 70.9
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 5.9e-73 278.5 244 60.7
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-72 277.3 199 70.4
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 7.9e-70 268.1 234 62.0
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.6e-68 263.1 248 56.5
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 3.7e-67 259.2 229 58.5
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.1e-66 257.7 189 71.4
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.1e-66 256.1 167 76.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 5.5e-63 245.4 238 53.4
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.8e-61 240.4 227 56.8
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.3e-59 231.9 285 48.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.2e-57 227.6 195 63.6
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 2.3e-53 213.4 150 70.7
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 3.1e-50 203.0 207 56.5
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.1e-50 203.0 134 76.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 8.0e-46 188.3 146 69.2
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.6e-41 174.1 148 62.2
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.9e-40 169.9 148 62.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-38 162.9 139 62.6
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-38 162.9 139 62.6
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 8.0e-38 161.8 158 58.9
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.6e-36 156.8 131 63.4
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 5.7e-36 155.6 123 68.3
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.1e-34 149.4 119 67.2
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.5e-31 141.0 157 52.2
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 1.8e-29 134.0 82 89.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.9e-27 125.9 74 81.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.8e-26 124.0 74 79.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.4e-26 123.6 74 79.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.2e-26 123.2 74 79.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-25 121.3 74 77.0
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.3e-24 117.1 75 76.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.3e-21 107.1 68 77.9
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.0e-20 104.0 194 35.6
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.4e-18 97.1 70 71.4
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.6e-17 94.4 63 76.2
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.7e-17 93.6 64 73.4
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.7e-16 90.9 90 55.6
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.1e-13 80.1 67 64.2
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 8.9e-13 78.6 46 87.0
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 7.5e-12 75.5 44 79.5
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.3e-11 74.7 64 59.4
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 2.4e-10 70.5 44 70.5
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.6e-09 67.8 62 56.5
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.1e-07 61.6 231 23.8


User provided reference genes

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