Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-50 202.6 100 100.0
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 2.7e-49 198.4 100 98.0
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.7e-49 198.4 100 98.0
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.6e-49 197.6 100 98.0
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.6e-49 197.6 100 98.0
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 1.7e-43 179.1 100 88.0
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 1.5e-31 139.4 98 79.6
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 1.3e-30 136.3 89 82.0
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 2.7e-25 118.6 83 75.9
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 5.6e-23 110.9 100 60.0
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 1.6e-22 109.4 93 64.5
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 9.9e-20 100.1 98 57.1
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 2.2e-19 99.0 95 54.7
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 3.8e-19 98.2 111 51.4
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 8.4e-19 97.1 95 56.8
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 7.9e-17 90.5 87 55.2
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 7.9e-17 90.5 97 53.6
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 6.7e-16 87.4 90 57.8
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.7e-16 87.4 102 51.0
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.1e-15 86.7 102 51.0
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.5e-15 86.3 102 51.0
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 4.3e-15 84.7 84 54.8
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 5.6e-15 84.3 112 46.4
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 5.6e-15 84.3 90 56.7
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 7.4e-15 84.0 94 48.9
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 7.4e-15 84.0 99 51.5
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 1.3e-14 83.2 90 54.4
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.6e-14 82.8 95 48.4
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 6.2e-14 80.9 97 52.6
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 1.1e-13 80.1 98 53.1
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.8e-13 79.3 96 49.0
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.6e-12 75.5 96 49.0
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 3.4e-12 75.1 96 44.8
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-11 73.2 99 47.5
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 3.8e-11 71.6 101 43.6
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.8e-11 71.6 91 46.2
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.9e-11 71.2 91 46.2
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.1e-10 70.1 91 47.3
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 1.1e-10 70.1 103 46.6
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.4e-10 69.7 91 47.3
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.5e-10 68.9 84 46.4
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 3.2e-10 68.6 98 43.9
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 4.2e-10 68.2 102 46.1
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 4.2e-10 68.2 102 46.1
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.2e-10 68.2 94 42.6
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 7.1e-10 67.4 81 49.4
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 7.1e-10 67.4 95 46.3
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 7.1e-10 67.4 91 44.0
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 9.3e-10 67.0 64 56.2
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 2.7e-09 65.5 101 45.5
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 4.6e-09 64.7 93 47.3
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 7.9e-09 63.9 101 38.6
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-08 63.2 79 48.1
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.8e-08 62.8 83 44.6
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 3.0e-08 62.0 92 41.3
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 3.0e-08 62.0 93 41.9
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 3.9e-08 61.6 90 42.2
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 3.9e-08 61.6 95 36.8
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 5.1e-08 61.2 100 37.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.1e-07 60.1 102 40.2
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.1e-07 60.1 96 41.7
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 2.5e-07 58.9 92 44.6
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 3.3e-07 58.5 59 52.5
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 3.3e-07 58.5 96 33.3
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 3.3e-07 58.5 104 40.4
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 4.3e-07 58.2 90 36.7
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 7.4e-07 57.4 101 35.6
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 7.4e-07 57.4 95 41.1
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 7.4e-07 57.4 70 48.6
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 9.6e-07 57.0 95 36.8
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 1.3e-06 56.6 111 36.0
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.3e-06 56.6 104 38.5
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 1.6e-06 56.2 100 37.0
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 1.6e-06 56.2 89 41.6
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 2.1e-06 55.8 116 38.8
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 2.1e-06 55.8 90 42.2
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.8e-06 55.5 106 35.8
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 3.7e-06 55.1 98 39.8
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 4.8e-06 54.7 101 37.6
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 4.8e-06 54.7 88 40.9
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 6.2e-06 54.3 57 49.1
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.2e-06 53.9 109 31.2
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 8.2e-06 53.9 90 37.8


User provided reference genes

Program Settings