Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1674.1 859 100.0
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1641.7 860 98.3
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1635.9 861 98.1
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1634.8 861 98.0
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1497.3 869 89.6
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1362.4 746 94.8
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1327.0 870 80.1
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1321.2 862 79.5
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1266.9 868 74.5
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1241.1 868 73.5
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1216.1 869 71.8
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1214.1 869 72.3
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1203.3 869 71.8
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1191.8 869 71.0
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1191.4 869 70.9
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1176.0 870 70.5
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1172.9 835 72.3
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1167.5 869 69.9
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1155.6 870 70.6
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1150.2 868 68.3
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1150.2 868 69.7
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1149.0 868 68.7
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1147.5 871 68.7
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1146.3 869 69.7
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1145.6 863 70.6
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1143.3 872 68.9
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1142.1 869 68.7
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1140.9 863 68.9
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1139.0 863 70.0
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1136.7 866 68.0
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1134.8 866 68.8
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1127.1 869 68.7
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1125.5 866 67.9
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1118.6 869 68.6
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1114.4 869 68.8
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1110.5 869 68.1
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1107.4 872 67.2
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1102.4 871 67.3
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 0.0e+00 1095.5 873 66.2
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 0.0e+00 1095.1 867 66.0
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 0.0e+00 1091.6 867 66.1
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1087.8 886 65.2
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1084.7 869 65.9
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1084.7 875 65.3
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1081.2 825 66.9
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1078.5 868 65.3
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 1.2e-311 1073.2 869 64.9
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 8.8e-311 1070.1 868 64.9
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.5e-310 1069.3 868 65.8
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 2.6e-310 1068.5 866 64.9
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 7.8e-307 1057.0 863 64.1
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.3e-306 1056.2 877 64.1
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 5.6e-305 1050.8 867 63.9
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 1.3e-304 1049.7 864 63.9
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 1.6e-304 1049.3 868 64.7
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 3.6e-304 1048.1 878 64.9
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 3.6e-304 1048.1 868 63.9
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 3.4e-302 1041.6 864 63.5
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 7.6e-302 1040.4 863 63.8
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 1.1e-300 1036.6 865 63.5
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 5.4e-300 1034.2 865 63.1
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 2.1e-299 1032.3 851 63.3
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 1.0e-298 1030.0 868 62.9
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 8.7e-298 1026.9 863 62.6
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 8.7e-298 1026.9 866 62.9
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 3.3e-297 1025.0 864 62.5
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 3.3e-297 1025.0 871 63.4
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 7.4e-297 1023.8 865 63.0
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 3.7e-296 1021.5 857 63.2
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 4.5e-294 1014.6 864 62.0
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 4.5e-294 1014.6 865 61.7
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 7.6e-294 1013.8 906 59.7
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 7.1e-292 1007.3 866 61.3
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 2.6e-286 988.8 871 61.1
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 5.8e-286 987.6 851 61.5
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 1.0e-285 986.9 851 61.7
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 5.5e-284 981.1 878 59.2
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 2.1e-283 979.2 877 61.1
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.1e-276 956.8 846 60.6
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 2.5e-276 955.7 753 68.4
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 4.2e-276 954.9 803 62.8
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 1.2e-275 953.4 867 58.7
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.4e-274 949.9 828 62.6
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 2.3e-274 949.1 824 61.3
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 4.5e-270 934.9 807 61.7
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 2.4e-263 912.5 848 58.6
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 3.7e-256 888.6 852 57.0
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 1.4e-255 886.7 808 59.8
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.7e-253 879.8 871 55.2
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 5.3e-247 858.2 867 53.6
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.5e-241 840.1 869 52.4
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 3.4e-241 839.0 868 53.5
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 1.3e-240 837.0 870 53.2
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 5.0e-237 825.1 652 67.0
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 5.5e-236 821.6 860 54.0
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 8.9e-234 814.3 813 56.0
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 8.6e-229 797.7 679 62.6
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 4.3e-204 715.7 755 52.1
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.9e-175 620.5 525 63.4
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.5e-164 584.3 729 47.6
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 9.4e-143 511.9 441 59.4
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 3.0e-141 506.9 835 38.0
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 4.0e-141 506.5 868 38.2
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 6.8e-133 479.2 848 37.4
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 4.0e-109 400.2 324 65.1
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 4.6e-97 360.1 1003 30.1
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 3.4e-60 237.7 189 64.6
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 2.2e-30 138.7 101 70.3
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 6.5e-27 127.1 95 64.2
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 4.8e-22 110.9 622 22.7
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 1.2e-20 106.3 64 79.7
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 1.2e-20 106.3 924 21.8
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 8.5e-19 100.1 97 53.6
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 1.6e-17 95.9 66 71.2
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 6.8e-16 90.5 106 53.8
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 7.5e-15 87.0 53 75.5
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 4.8e-14 84.3 63 63.5
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.0e-12 79.0 57 66.7
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 5.9e-12 77.4 57 63.2
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 8.0e-09 67.0 44 70.5
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 1.8e-08 65.9 599 22.4
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 2.3e-08 65.5 54 55.6
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 2.0e-07 62.4 101 43.6
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 5.7e-07 60.8 52 50.0
Lsat_1_v5_gn_4_67501 Lactuca sativa HOM05D001373 ORTHO05D001330 3.7e-06 58.2 42 61.9


User provided reference genes

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