Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.1e-61 238.8 117 100.0
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.4e-35 151.8 84 91.7
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.4e-35 151.8 84 91.7
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.2e-34 149.1 84 90.5
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 6.3e-34 147.5 84 89.3
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 6.6e-31 137.5 84 83.3
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.5e-27 124.0 86 76.7
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.4e-25 119.0 86 73.3
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 7.0e-25 117.5 86 70.9
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 9.2e-25 117.1 84 70.2
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.6e-24 116.3 84 70.2
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 6.0e-24 114.4 78 73.1
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 7.8e-24 114.0 84 71.4
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.3e-23 113.2 86 67.4
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.3e-23 113.2 84 70.2
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.7e-23 112.8 84 67.9
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.9e-23 111.7 84 69.0
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.9e-23 111.7 84 70.2
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 3.9e-23 111.7 84 70.2
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 3.9e-23 111.7 91 61.5
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 5.0e-23 111.3 84 66.7
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 6.6e-23 110.9 86 67.4
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.9e-22 109.4 84 67.9
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.5e-22 109.0 84 69.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 3.3e-22 108.6 86 72.1
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 4.3e-22 108.2 84 67.9
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 5.6e-22 107.8 85 69.4
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 5.6e-22 107.8 90 65.6
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 7.3e-22 107.5 84 67.9
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 9.5e-22 107.1 84 67.9
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 9.5e-22 107.1 78 73.1
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.2e-21 106.7 84 67.9
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.2e-21 106.7 84 67.9
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.6e-21 106.3 86 66.3
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.1e-21 105.9 85 64.7
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.8e-21 105.5 84 66.7
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.8e-21 105.5 84 71.4
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 4.7e-21 104.8 89 62.9
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.2e-21 104.4 84 64.3
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 6.2e-21 104.4 75 73.3
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 8.0e-21 104.0 84 70.2
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 8.0e-21 104.0 85 64.7
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 8.0e-21 104.0 85 64.7
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 8.0e-21 104.0 90 63.3
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.1e-20 103.6 86 64.0
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.1e-20 103.6 86 64.0
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.8e-20 102.8 87 65.5
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.3e-20 102.4 84 67.9
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 2.3e-20 102.4 86 67.4
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 3.1e-20 102.1 85 65.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.1e-20 102.1 90 62.2
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 3.1e-20 102.1 91 63.7
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.1e-20 102.1 75 72.0
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.0e-20 101.7 84 65.5
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 6.8e-20 100.9 86 64.0
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 8.9e-20 100.5 89 60.7
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.2e-19 100.1 92 57.6
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.2e-19 100.1 85 65.9
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.5e-19 99.8 86 64.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.5e-19 99.8 84 66.7
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.0e-19 99.4 86 59.3
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.6e-19 99.0 86 66.3
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 3.4e-19 98.6 85 60.0
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 7.5e-19 97.4 90 61.1
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 7.5e-19 97.4 90 61.1
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 7.5e-19 97.4 90 60.0
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 9.8e-19 97.1 93 59.1
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 9.8e-19 97.1 93 59.1
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.3e-18 96.7 85 61.2
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.3e-18 96.7 84 64.3
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.2e-18 95.9 87 60.9
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 2.9e-18 95.5 83 62.7
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 6.4e-18 94.4 86 57.0
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 6.4e-18 94.4 86 57.0
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 6.4e-18 94.4 86 57.0
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 6.4e-18 94.4 84 63.1
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 6.4e-18 94.4 89 56.2
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 6.4e-18 94.4 85 61.2
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.1e-17 93.6 86 60.5
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.1e-17 93.6 89 61.8
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.4e-17 93.2 86 55.8
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.4e-17 93.2 86 55.8
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.4e-17 93.2 86 55.8
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.4e-17 93.2 62 71.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.4e-17 92.4 86 61.6
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.2e-17 92.0 68 69.1
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.2e-17 92.0 68 69.1
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 3.2e-17 92.0 85 60.0
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 3.2e-17 92.0 76 64.5
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 4.1e-17 91.7 86 59.3
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 9.2e-17 90.5 85 58.8
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.2e-16 90.1 84 58.3
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-16 89.4 84 57.1
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 2.7e-16 89.0 89 57.3
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.7e-16 89.0 90 55.6
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 4.6e-16 88.2 59 71.2
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 4.6e-16 88.2 90 54.4
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 7.8e-16 87.4 86 57.0
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 7.8e-16 87.4 98 53.1
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.0e-15 87.0 84 60.7
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.7e-15 86.3 72 61.1
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.3e-15 85.9 86 57.0
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.0e-15 85.5 84 58.3
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.0e-15 85.5 89 52.8
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 3.9e-15 85.1 48 81.2
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 5.1e-15 84.7 75 57.3
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 6.6e-15 84.3 64 62.5
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-14 83.6 84 52.4
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.1e-14 83.6 85 56.5
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.1e-14 83.6 75 58.7
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 3.3e-14 82.0 91 54.9
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.3e-14 81.6 89 53.9
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 4.3e-14 81.6 86 51.2
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 7.3e-14 80.9 84 52.4
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.3e-14 80.9 75 58.7
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 9.5e-14 80.5 84 56.0
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.6e-13 79.7 66 63.6
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.6e-13 79.7 54 70.4
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.1e-13 79.3 75 57.3
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.6e-13 78.6 80 53.8
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 6.2e-13 77.8 54 68.5
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.1e-12 77.0 69 60.9
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 4.0e-12 75.1 71 59.2
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 5.2e-12 74.7 88 51.1
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 6.8e-12 74.3 52 67.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 6.8e-12 74.3 85 51.8
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.5e-11 73.2 82 51.2
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.5e-11 73.2 89 48.3
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.0e-11 72.8 90 47.8
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.0e-11 72.8 90 47.8
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.4e-11 72.0 87 50.6
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 4.4e-11 71.6 82 51.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 5.8e-11 71.2 87 50.6
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 5.8e-11 71.2 87 49.4
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.7e-10 69.7 87 49.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.9e-10 68.9 85 45.9
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.9e-10 68.9 85 45.9
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.9e-10 68.9 85 45.9
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 3.2e-09 65.5 87 49.4
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.2e-08 63.5 57 56.1
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.6e-08 63.2 79 46.8
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 2.1e-08 62.8 65 56.9
MBI13_g11352_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.7e-07 59.7 52 57.7
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.5e-06 55.8 55 54.5
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 2.5e-06 55.8 66 48.5
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 4.3e-06 55.1 44 63.6
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 9.5e-06 53.9 96 41.7


User provided reference genes

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