Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 3210.6 1641 100.0
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 3191.7 1641 99.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1630.5 881 95.5
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1608.2 891 93.6
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1562.7 879 92.9
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 0.0e+00 1535.0 834 94.6
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1519.2 879 89.1
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1504.6 879 88.1
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1226.5 877 73.1
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 0.0e+00 1144.4 917 67.8
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1128.6 662 86.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1102.8 945 63.6
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.2e-309 1065.8 881 63.8
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 3.0e-307 1059.3 880 62.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.0e-302 1044.3 883 61.6
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 2.7e-295 1019.6 881 60.4
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 6.5e-294 1015.0 882 61.2
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.0e-291 1007.7 881 60.5
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.4e-280 970.7 880 59.1
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.1e-280 969.5 880 59.1
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 9.2e-280 968.0 855 60.2
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.7e-278 963.8 886 59.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 4.3e-277 959.1 879 58.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 5.6e-277 958.7 879 60.0
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.6e-276 957.2 885 58.3
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.1e-276 956.8 879 57.9
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 6.1e-276 955.3 879 57.6
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 8.3e-273 944.9 883 58.4
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.4e-272 944.1 891 57.5
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 8.6e-270 934.9 918 55.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.5e-269 933.3 878 56.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.0e-267 927.9 880 56.2
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 4.0e-267 926.0 894 55.1
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 5.8e-266 922.2 884 56.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.3e-265 921.0 879 57.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.4e-264 916.8 761 63.5
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.0e-258 897.1 939 54.3
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.4e-256 890.2 743 62.9
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-255 887.9 893 54.0
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 3.9e-254 882.9 878 54.1
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 8.6e-254 881.7 881 54.5
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.5e-253 880.2 883 54.2
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.2e-252 877.9 876 53.4
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.1e-251 874.8 884 54.2
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.5e-250 870.9 884 53.7
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.4e-250 869.8 851 56.8
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.4e-248 864.4 863 54.1
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.4e-243 847.8 880 52.3
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 6.9e-243 845.5 883 53.2
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.1e-240 838.2 883 51.9
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 5.4e-240 835.9 883 51.8
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 5.1e-238 829.3 886 51.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.5e-237 827.0 878 52.6
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.4e-235 821.2 864 52.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 2.4e-235 820.5 876 51.1
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 6.9e-235 818.9 882 50.0
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.2e-234 818.1 728 58.5
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 5.8e-234 815.8 861 52.6
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 9.9e-234 815.1 696 61.1
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 4.9e-233 812.8 873 51.9
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.2e-231 808.1 883 51.0
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 6.0e-231 805.8 882 49.0
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.5e-226 791.2 903 49.1
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 3.4e-226 790.0 877 49.5
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.8e-225 786.6 886 47.9
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.9e-224 784.3 886 48.8
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 4.2e-224 783.1 887 48.8
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 7.1e-224 782.3 882 49.1
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 6.0e-223 779.2 695 58.8
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-219 768.5 888 47.3
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 2.0e-218 764.2 649 62.4
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.4e-218 763.5 957 46.7
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 4.5e-218 763.1 911 47.7
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 1.3e-214 751.5 882 46.9
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 5.1e-214 749.6 881 48.8
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.1e-213 748.4 886 46.8
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 9.7e-213 745.3 881 47.0
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.8e-212 743.8 886 46.4
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 2.8e-212 743.8 886 46.7
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 8.2e-212 742.3 886 46.6
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.1e-211 741.9 855 49.0
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 4.1e-211 740.0 709 56.6
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 6.9e-211 739.2 727 53.8
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.5e-210 738.0 884 46.7
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.7e-209 734.6 882 47.8
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.7e-209 734.6 886 46.2
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.7e-209 734.6 889 47.2
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.2e-209 734.2 896 46.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 2.5e-208 730.7 890 47.4
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 7.2e-208 729.2 889 46.7
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.1e-207 727.6 809 49.9
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 6.3e-204 716.1 904 45.5
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.4e-203 714.9 889 46.3
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.2e-201 707.6 883 46.5
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 8.8e-198 695.7 706 55.1
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-197 694.5 890 46.3
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.7e-197 693.0 831 47.8
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 3.6e-191 673.7 876 45.0
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 5.9e-186 656.4 885 44.4
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.9e-184 651.4 928 42.8
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.8e-182 644.8 622 54.0
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 7.0e-179 632.9 819 45.8
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 2.9e-169 600.9 696 47.0
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.0e-169 600.1 666 51.1
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.3e-161 574.7 864 40.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.4e-149 533.9 757 42.5
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.3e-144 517.7 637 45.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 2.8e-143 514.6 748 40.8
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 5.2e-142 510.4 911 39.0
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-141 508.8 551 51.5
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 4.7e-135 487.3 885 36.0
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-126 459.1 558 45.0
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 9.3e-123 446.4 689 38.8
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 8.2e-103 380.2 262 74.8
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.3e-100 372.9 710 37.5
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 9.0e-94 350.1 581 37.5
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-93 349.7 241 77.2
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.8e-92 344.7 244 73.8
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 2.5e-91 342.0 810 31.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.7e-90 338.6 804 32.0
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.7e-90 338.6 804 32.0
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 3.0e-89 335.1 554 40.1
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.0e-88 332.4 790 30.8
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.1e-86 323.6 240 69.6
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.8e-78 299.3 512 35.0
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 7.7e-77 293.9 727 30.1
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 4.2e-75 288.1 192 77.6
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 9.1e-70 270.4 193 69.9
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 5.9e-69 267.7 194 73.2
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.0e-68 264.6 195 67.7
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 7.0e-62 244.2 203 59.1
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 6.5e-60 237.7 188 61.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 3.0e-57 228.8 750 27.5
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 8.8e-57 227.3 285 46.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.0e-52 213.8 305 37.4
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.0e-52 213.8 201 54.2
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.6e-52 211.1 338 38.5
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 4.2e-51 208.4 235 49.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.2e-50 206.8 143 75.5
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.0e-49 201.8 334 38.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-48 199.9 108 94.4
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.0e-41 175.3 215 43.7
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-40 173.3 188 49.5
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 6.4e-39 167.9 142 62.7
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.7e-37 162.5 224 39.3
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-35 157.1 220 42.7
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.3e-35 155.6 164 51.2
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.3e-33 149.4 183 44.3
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 4.3e-27 128.6 85 81.2
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 5.6e-27 128.3 110 64.5
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.4e-25 123.6 402 28.4
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 8.9e-25 120.9 94 61.7
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.2e-23 116.3 286 31.1
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.9e-23 115.9 82 67.1
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.9e-22 113.2 100 59.0
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.7e-20 106.7 111 48.6
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 5.6e-19 101.7 183 35.0
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 7.3e-19 101.3 170 37.6
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 6.2e-18 98.2 200 33.5
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 1.5e-16 93.6 121 38.8
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.3e-10 73.9 50 68.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-08 66.6 76 44.7
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.9e-07 62.8 88 38.6


User provided reference genes

Program Settings