Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.0e-189 665.6 342 100.0
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 2.8e-183 645.2 342 97.4
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.1e-182 641.7 362 93.4
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.5e-181 638.3 347 96.3
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.5e-181 638.3 349 95.4
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.2e-180 635.6 349 95.1
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.7e-178 628.6 347 95.1
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 4.5e-173 611.3 345 92.2
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.8e-153 546.2 349 81.1
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 4.0e-145 518.5 353 78.2
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 9.9e-136 487.3 339 73.2
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.2e-133 480.3 349 73.4
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 2.3e-132 476.1 352 72.4
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.5e-131 473.4 353 72.5
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.5e-131 473.4 348 71.0
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 1.5e-131 473.4 348 71.0
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.6e-130 469.9 350 71.4
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 6.2e-130 468.0 347 70.6
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 8.1e-130 467.6 338 71.9
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 8.1e-130 467.6 326 73.6
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 1.8e-129 466.5 345 71.9
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 9.0e-129 464.2 328 73.2
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.2e-128 463.8 349 69.9
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 4.4e-128 461.8 321 72.6
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 7.6e-128 461.1 301 76.4
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 1.4e-126 456.8 349 70.5
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.9e-126 456.4 353 70.0
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 3.5e-125 452.2 350 68.0
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 4.6e-125 451.8 327 70.3
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 4.6e-125 451.8 342 68.7
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 7.8e-125 451.1 341 70.1
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.0e-124 450.7 336 70.2
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 1.3e-124 450.3 351 68.4
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.7e-124 449.9 255 84.3
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 2.3e-124 449.5 331 70.1
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 3.9e-124 448.7 351 68.9
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 5.1e-124 448.4 344 68.9
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 5.1e-124 448.4 344 68.9
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 6.6e-124 448.0 343 69.7
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.1e-123 447.2 349 67.3
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 1.1e-123 447.2 345 68.7
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.1e-123 447.2 346 69.4
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 3.3e-123 445.7 346 68.5
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 4.3e-123 445.3 384 63.5
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 4.3e-123 445.3 353 68.3
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 4.3e-123 445.3 344 68.3
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 9.6e-123 444.1 342 68.7
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 9.6e-123 444.1 342 68.7
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 9.6e-123 444.1 340 68.8
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 1.3e-122 443.7 284 76.4
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 2.8e-122 442.6 348 68.4
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 3.6e-122 442.2 343 69.1
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 3.6e-122 442.2 343 69.1
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 4.8e-122 441.8 348 68.1
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 6.2e-122 441.4 343 67.9
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 3.1e-121 439.1 352 67.6
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 4.5e-120 435.3 357 66.1
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 4.5e-120 435.3 350 69.7
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 5.8e-120 434.9 344 67.4
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 7.6e-120 434.5 349 65.6
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 9.9e-120 434.1 293 74.1
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.1e-118 430.6 346 68.5
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 9.3e-118 427.6 345 67.0
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 3.5e-117 425.6 340 67.4
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 1.0e-116 424.1 352 66.5
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.3e-116 423.7 345 65.5
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.8e-116 423.3 299 71.2
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 3.0e-116 422.5 345 66.7
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 3.0e-116 422.5 331 67.1
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 6.7e-116 421.4 346 67.9
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 6.7e-116 421.4 310 70.6
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 8.7e-116 421.0 341 66.6
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 8.7e-116 421.0 255 80.4
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 4.3e-115 418.7 335 66.0
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 4.3e-115 418.7 342 66.1
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.6e-114 416.8 342 65.8
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 1.6e-114 416.8 293 71.3
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.1e-114 416.4 258 78.3
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 4.8e-114 415.2 296 70.9
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 4.8e-114 415.2 344 65.7
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.4e-113 413.7 310 69.7
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.4e-113 412.9 346 67.1
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.2e-112 410.6 333 67.0
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.5e-112 410.2 294 70.4
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 4.5e-112 408.7 344 64.5
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 3.8e-111 405.6 332 66.6
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 1.5e-107 393.7 312 68.9
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.6e-106 390.2 229 80.8
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 3.1e-105 386.0 306 66.3
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 5.8e-104 381.7 339 61.9
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 5.5e-102 375.2 302 66.9
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 1.8e-100 370.2 355 59.4
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 1.4e-92 344.0 343 54.8
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 3.2e-86 322.8 323 57.3
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 2.2e-82 310.1 352 54.0
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 5.3e-81 305.4 295 52.2
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 5.3e-81 305.4 255 61.2
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 3.6e-77 292.7 163 85.9
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 6.1e-77 292.0 355 46.8
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 8.2e-74 281.6 173 75.1
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 2.2e-71 273.5 294 49.7
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 8.8e-68 261.5 187 65.8
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 7.0e-65 251.9 144 79.9
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 6.8e-60 235.3 224 49.1
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.3e-55 221.1 132 82.6
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 5.5e-54 215.7 126 82.5
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 5.5e-54 215.7 126 82.5
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 9.5e-54 214.9 173 66.5
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.4e-49 200.3 132 74.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 6.0e-40 169.1 364 31.9
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 1.9e-38 164.1 342 34.8
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 2.1e-32 144.1 107 69.2
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 4.6e-32 142.9 238 37.4
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 5.1e-31 139.4 155 58.1
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 2.4e-25 120.6 201 41.3
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 3.9e-23 113.2 83 62.7
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.2e-21 108.2 94 59.6
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 8.1e-21 105.5 53 88.7
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 3.0e-15 87.0 65 61.5
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 3.3e-14 83.6 126 41.3
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 3.6e-13 80.1 138 44.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-12 78.2 126 39.7
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 7.6e-11 72.4 38 84.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 4.6e-08 63.2 77 46.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 4.6e-08 63.2 77 46.8


User provided reference genes

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