Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.4e-98 362.8 176 100.0
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.7e-44 182.6 197 54.3
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 3.4e-39 165.6 116 70.7
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 7.5e-39 164.5 110 73.6
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.9e-34 149.8 225 43.6
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 1.5e-31 140.2 172 50.0
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 5.4e-29 131.7 159 46.5
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 6.0e-28 128.3 147 47.6
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 1.0e-27 127.5 197 43.7
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 5.1e-27 125.2 175 41.1
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 1.5e-26 123.6 145 44.8
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.5e-26 123.6 175 43.4
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.9e-26 123.2 158 44.9
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 2.5e-26 122.9 173 40.5
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 3.3e-26 122.5 177 41.8
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 4.3e-26 122.1 127 48.8
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 4.3e-26 122.1 138 49.3
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 7.3e-26 121.3 171 40.4
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 2.1e-25 119.8 176 42.6
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 6.2e-25 118.2 159 43.4
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 6.2e-25 118.2 190 40.0
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 1.4e-24 117.1 156 43.6
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 3.1e-24 115.9 192 39.1
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 3.1e-24 115.9 167 43.7
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.0e-24 115.5 146 44.5
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.0e-24 115.5 145 45.5
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 4.0e-24 115.5 145 45.5
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 4.0e-24 115.5 151 44.4
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 4.0e-24 115.5 140 43.6
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 9.0e-24 114.4 170 39.4
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 2.0e-23 113.2 154 45.5
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.6e-23 112.8 145 43.4
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.4e-23 112.1 144 43.1
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 4.4e-23 112.1 144 43.1
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 4.4e-23 112.1 164 43.3
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 5.8e-23 111.7 179 37.4
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 7.6e-23 111.3 186 39.2
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 1.3e-22 110.5 148 43.9
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.3e-22 110.5 178 35.4
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 1.7e-22 110.2 136 42.6
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 3.8e-22 109.0 179 36.3
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 4.9e-22 108.6 116 50.9
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 6.4e-22 108.2 151 41.1
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 6.4e-22 108.2 143 41.3
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 1.1e-21 107.5 170 37.1
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 1.4e-21 107.1 148 40.5
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 1.9e-21 106.7 180 37.2
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 2.4e-21 106.3 147 40.1
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 3.2e-21 105.9 155 38.1
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 4.2e-21 105.5 145 37.9
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 4.2e-21 105.5 147 40.1
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 4.2e-21 105.5 146 37.7
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 5.4e-21 105.1 157 40.1
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 5.4e-21 105.1 175 37.7
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 5.4e-21 105.1 152 39.5
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 9.3e-21 104.4 152 40.1
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 9.3e-21 104.4 203 33.5
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.6e-20 103.6 171 38.6
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.6e-20 103.6 147 44.2
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.6e-20 103.6 165 38.8
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 2.1e-20 103.2 151 42.4
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.7e-20 102.8 153 40.5
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 2.7e-20 102.8 143 39.9
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 3.5e-20 102.4 200 34.5
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 4.6e-20 102.1 212 32.1
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 6.0e-20 101.7 159 39.0
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 7.8e-20 101.3 140 39.3
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 1.0e-19 100.9 164 38.4
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.0e-19 100.9 175 38.3
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 1.0e-19 100.9 175 38.3
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 1.0e-19 100.9 175 38.3
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 2.3e-19 99.8 142 38.7
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 5.1e-19 98.6 171 38.0
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 6.6e-19 98.2 130 40.8
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 6.6e-19 98.2 149 39.6
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 1.1e-18 97.4 191 34.6
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.5e-18 97.1 176 37.5
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.5e-18 97.1 176 37.5
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.5e-18 97.1 210 32.9
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 1.5e-18 97.1 140 37.9
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.9e-18 96.7 212 31.6
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 1.9e-18 96.7 143 39.9
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 1.9e-18 96.7 138 39.9
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.5e-18 96.3 174 36.2
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 2.5e-18 96.3 178 36.0
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 3.3e-18 95.9 216 31.9
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 7.3e-18 94.7 196 33.7
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 7.3e-18 94.7 202 33.2
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.3e-17 94.0 128 44.5
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 1.3e-17 94.0 149 37.6
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 3.6e-17 92.4 129 41.1
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 3.6e-17 92.4 142 38.7
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 6.2e-17 91.7 122 45.1
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 8.1e-17 91.3 158 35.4
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.1e-16 90.9 161 36.6
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.1e-16 90.9 169 35.5
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.4e-16 90.5 106 45.3
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.8e-16 90.1 156 37.2
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 2.4e-16 89.7 131 37.4
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 5.3e-16 88.6 226 31.4
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 5.3e-16 88.6 205 31.7
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 1.2e-15 87.4 152 36.8
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.2e-15 87.4 214 32.7
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.5e-15 87.0 195 33.3
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.5e-15 87.0 215 32.6
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 2.0e-15 86.7 147 34.7
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 3.4e-15 85.9 206 34.0
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 4.5e-15 85.5 120 39.2
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 4.5e-15 85.5 219 30.6
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 7.6e-15 84.7 103 43.7
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 9.9e-15 84.3 176 31.8
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 9.9e-15 84.3 151 35.1
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 2.2e-14 83.2 103 42.7
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 2.2e-14 83.2 87 52.9
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 2.2e-14 83.2 147 32.7
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 2.2e-14 83.2 118 37.3
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 3.8e-14 82.4 117 41.0
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 8.4e-14 81.3 97 44.3
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 1.1e-13 80.9 202 32.2
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 1.1e-13 80.9 134 36.6
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 6.0e-12 75.1 86 39.5
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.3e-11 73.9 91 44.0
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 3.9e-11 72.4 130 33.8
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 1.1e-10 70.9 83 44.6
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 1.1e-10 70.9 83 44.6
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 1.6e-09 67.0 117 32.5
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 3.7e-09 65.9 77 42.9
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 8.1e-09 64.7 84 40.5
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 3.1e-08 62.8 134 32.8
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 6.9e-08 61.6 122 32.8
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 9.0e-08 61.2 125 36.8
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 9.9e-07 57.8 117 35.9
CDE06G1771 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 6.4e-06 55.1 51 47.1


User provided reference genes

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